Strain identifier
BacDive ID: 6925
Type strain: 
Species: Methanobacterium formicicum
Strain Designation: JF-1
Strain history: <- J.G. Ferry, JF-1
NCBI tax ID(s): 2162 (species)
version 8.1 (current version)
General
@ref: 1184
BacDive-ID: 6925
DSM-Number: 2639
keywords: Archaea, anaerobe
description: Methanobacterium formicicum JF-1 is an anaerobe archaeon that was isolated from from methanogenic benzoate degrading consortium.
NCBI tax id
- NCBI tax id: 2162
- Matching level: species
strain history
- @ref: 1184
- history: <- J.G. Ferry, JF-1
doi: 10.13145/bacdive6925.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobacterium
- species: Methanobacterium formicicum
- full scientific name: Methanobacterium formicicum Schnellen 1947 (Approved Lists 1980)
@ref: 1184
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobacterium
species: Methanobacterium formicicum
full scientific name: Methanobacterium formicicum Schnellen 1947 emend. Judicial Commission 1992
strain designation: JF-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 1184
- name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
- growth: yes
- link: https://mediadive.dsmz.de/medium/119
- composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water
culture temp
- @ref: 1184
- growth: positive
- type: growth
- temperature: 37-45
Physiology and metabolism
oxygen tolerance
- @ref: 1184
- oxygen tolerance: anaerobe
compound production
- @ref: 1184
- compound: formate dehydrogenase
Isolation, sampling and environmental information
isolation
- @ref: 1184
- sample type: from methanogenic benzoate degrading consortium
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Microbial community
Safety information
risk assessment
- @ref: 1184
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 1184
culture collection no.: DSM 2639, OCM 105
straininfo link
- @ref: 76389
- straininfo: 47649
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 6769911 | Metabolism of formate in Methanobacterium formicicum. | Schauer NL, Ferry JG | J Bacteriol | 10.1128/jb.142.3.800-807.1980 | 1980 | Carbon Dioxide/metabolism, Euryarchaeota/enzymology/growth & development/*metabolism, Formate Dehydrogenases/metabolism, Formates/*metabolism, Hydrogen/metabolism, Hydrogen-Ion Concentration, Methane/biosynthesis, Temperature | Enzymology |
| Metabolism | 7836329 | Methanobacterium formicicum, a mesophilic methanogen, contains three HFo histones. | Darcy TJ, Sandman K, Reeve JN | J Bacteriol | 10.1128/jb.177.3.858-860.1995 | 1995 | Amino Acid Sequence, *Archaeal Proteins, Bacterial Proteins/*analysis, Base Sequence, DNA/metabolism, DNA-Binding Proteins/*analysis, Histones/*analysis/metabolism, Methanobacterium/*chemistry, Molecular Sequence Data | Genetics |
| Phylogeny | 16014504 | The first true obligately syntrophic propionate-oxidizing bacterium, Pelotomaculum schinkii sp. nov., co-cultured with Methanospirillum hungatei, and emended description of the genus Pelotomaculum. | de Bok FAM, Harmsen HJM, Plugge CM, de Vries MC, Akkermans ADL, de Vos WM, Stams AJM | Int J Syst Evol Microbiol | 10.1099/ijs.0.02880-0 | 2005 | Anaerobiosis, *Bioreactors, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, In Situ Hybridization, Fluorescence, Industrial Waste, Methanospirillum/*growth & development, Molecular Sequence Data, Oxidation-Reduction, Peptococcaceae/*classification/genetics/*growth & development/isolation & purification, Phenotype, Propionates/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Waste Disposal, Fluid | Cultivation |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1184 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2639) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2639 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 76389 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47649.1 | StrainInfo: A central database for resolving microbial strain identifiers |