Strain identifier

BacDive ID: 69

Type strain: Yes

Species: Muricoccus roseus

Strain Designation: 173/96

Strain history: CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 173/96 <- 1998, M.A. Anderson

NCBI tax ID(s): 198092 (species)

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General

@ref: 5460

BacDive-ID: 69

DSM-Number: 14916

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Muricoccus roseus 173/96 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from wall of a childrens care center.

NCBI tax id

  • NCBI tax id: 198092
  • Matching level: species

strain history

@refhistory
5460<- P. Kämpfer; 173/96 <- M. A. Andersson
67772Kämpfer, P. et al. (2003) Institut für Angewandte Mikrobiologie, Germany [Roseomonas rosea (homotypic synonym, validly published, illegitimate name. Illegitimate according to rule Rule 12b; Roseomonas gilardii subsp. rosea was validly published by Han et
122254CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 173/96 <- 1998, M.A. Anderson

doi: 10.13145/bacdive69.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Muricoccus
  • species: Muricoccus roseus
  • full scientific name: Muricoccus roseus Kämpfer et al. 2003

  • synonyms

    @refsynonym
    20215Roseomonas rosea
    20215Pararoseomonas rosea

@ref: 5460

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas rosea

full scientific name: Roseomonas rosea (Kämpfer et al. 2003) Sánchez-Porro et al. 2009

strain designation: 173/96

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
122254negativerod-shapedno
125438negative97.296

colony morphology

  • @ref: 122254
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5460TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33791MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122254CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
5460positivegrowth28
33791positivegrowth30
67772positiveminimum15
67772positiveoptimum30
67772positivemaximum45
122254positivegrowth10-41
122254nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 122254
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122254NaClpositivegrowth0 %
122254NaClnogrowth2 %
122254NaClnogrowth4 %
122254NaClnogrowth6 %
122254NaClnogrowth8 %
122254NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12225416947citrate-carbon source
1222544853esculin-hydrolysis
122254606565hippurate+hydrolysis
12225417632nitrate+reduction
12225416301nitrite-reduction
12225417632nitrate-respiration

antibiotic resistance

  • @ref: 122254
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122254
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12225415688acetoin-
12225417234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382trypsin-3.4.21.4
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
122254oxidase+
122254beta-galactosidase+3.2.1.23
122254alcohol dehydrogenase-1.1.1.1
122254gelatinase-
122254amylase+
122254DNase-
122254caseinase-3.4.21.50
122254catalase+1.11.1.6
122254tween esterase+
122254gamma-glutamyltransferase+2.3.2.2
122254lecithinase-
122254lipase-
122254lysine decarboxylase-4.1.1.18
122254ornithine decarboxylase-4.1.1.17
122254phenylalanine ammonia-lyase-4.3.1.24
122254tryptophan deaminase-
122254urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122254-+++-+---+-+--+-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122254+-------------------------------------------------------------+--+---------+----------+------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
5460wall of a childrens care centerFinlandFINEurope
67772Wall of a childrens care centerFinlandFINEurope2002
122254Wall of a children car centreFinlandFINEurope1998

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment
  • Cat3: #House

taxonmaps

  • @ref: 69479
  • File name: preview.99_3666.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1896;97_2279;98_2803;99_3666&stattab=map
  • Last taxonomy: Roseomonas rosea subclade
  • 16S sequence: AJ488505
  • Sequence Identity:
  • Total samples: 4497
  • soil counts: 1063
  • aquatic counts: 1087
  • animal counts: 2201
  • plant counts: 146

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
54601Risk group (German classification)
677721
1222541Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5460
  • description: Muricoccus roseus partial 16S rRNA gene
  • accession: AJ488505
  • length: 1485
  • database: nuccore
  • NCBI tax ID: 198092

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Roseomonas rosea strain DSM 14916198092.3wgspatric198092
66792Roseomonas rosea DSM 149162585427600draftimg198092
67772Roseomonas rosea DSM 14916GCA_900141905scaffoldncbi198092

GC content

  • @ref: 5460
  • GC-content: 68.9

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.296no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.119yes
125438spore-formingspore-formingAbility to form endo- or exosporesno78.929no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.88yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes84.252yes
125438motile2+flagellatedAbility to perform flagellated movementyes74.59no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno53
125439BacteriaNetmotilityAbility to perform movementno59.1
125439BacteriaNetgram_stainReaction to gram-stainingnegative86
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe87.3

External links

@ref: 5460

culture collection no.: DSM 14916, CIP 107419, UCCCB4

straininfo link

  • @ref: 69753
  • straininfo: 113558

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12747406Teichococcus ludipueritiae gen. nov. sp. nov., and Muricoccus roseus gen. nov. sp. nov. representing two new genera of the alpha-1 subclass of the Proteobacteria.Kampfer P, Andersson MA, Jackel U, Salkinoja-Salonen MSyst Appl Microbiol10.1078/0723202033223372722003Alphaproteobacteria/*classification/genetics/isolation & purification/ultrastructure, Base Composition, Base Sequence, Culture Media/chemistry, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/analysisGenetics
Phylogeny19406818Transfer of Teichococcus ludipueritiae and Muricoccus roseus to the genus Roseomonas, as Roseomonas ludipueritiae comb. nov. and Roseomonas rosea comb. nov., respectively, and emended description of the genus Roseomonas.Sanchez-Porro C, Gallego V, Busse HJ, Kampfer P, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.004820-02009Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Methylobacteriaceae/*classification/genetics/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5460Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14916)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14916
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33791Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4853
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67772Curators of the UCCCBhttps://ucccb.uc.pt/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69753Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113558.1StrainInfo: A central database for resolving microbial strain identifiers
122254Curators of the CIPCollection of Institut Pasteur (CIP 107419)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107419
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1