Strain identifier
BacDive ID: 69
Type strain:
Species: Muricoccus roseus
Strain Designation: 173/96
Strain history: CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 173/96 <- 1998, M.A. Anderson
NCBI tax ID(s): 198092 (species)
General
@ref: 5460
BacDive-ID: 69
DSM-Number: 14916
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped
description: Muricoccus roseus 173/96 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from wall of a childrens care center.
NCBI tax id
- NCBI tax id: 198092
- Matching level: species
strain history
@ref | history |
---|---|
5460 | <- P. Kämpfer; 173/96 <- M. A. Andersson |
67772 | Kämpfer, P. et al. (2003) Institut für Angewandte Mikrobiologie, Germany [Roseomonas rosea (homotypic synonym, validly published, illegitimate name. Illegitimate according to rule Rule 12b; Roseomonas gilardii subsp. rosea was validly published by Han et |
122254 | CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 173/96 <- 1998, M.A. Anderson |
doi: 10.13145/bacdive69.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Muricoccus
- species: Muricoccus roseus
- full scientific name: Muricoccus roseus Kämpfer et al. 2003
synonyms
@ref synonym 20215 Pararoseomonas rosea 20215 Roseomonas rosea
@ref: 5460
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas rosea
full scientific name: Roseomonas rosea (Kämpfer et al. 2003) Sánchez-Porro et al. 2009
strain designation: 173/96
type strain: yes
Morphology
cell morphology
- @ref: 122254
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 122254
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5460 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
33791 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122254 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5460 | positive | growth | 28 | mesophilic |
33791 | positive | growth | 30 | mesophilic |
67772 | positive | minimum | 15 | psychrophilic |
67772 | positive | optimum | 30 | mesophilic |
67772 | positive | maximum | 45 | thermophilic |
122254 | positive | growth | 10-41 | |
122254 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 122254
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
122254 | NaCl | positive | growth | 0 % |
122254 | NaCl | no | growth | 2 % |
122254 | NaCl | no | growth | 4 % |
122254 | NaCl | no | growth | 6 % |
122254 | NaCl | no | growth | 8 % |
122254 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
122254 | 16947 | citrate | - | carbon source |
122254 | 4853 | esculin | - | hydrolysis |
122254 | 606565 | hippurate | + | hydrolysis |
122254 | 17632 | nitrate | + | reduction |
122254 | 16301 | nitrite | - | reduction |
122254 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 122254
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 122254
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
122254 | 15688 | acetoin | - | |
122254 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
122254 | oxidase | + | |
122254 | beta-galactosidase | + | 3.2.1.23 |
122254 | alcohol dehydrogenase | - | 1.1.1.1 |
122254 | gelatinase | - | |
122254 | amylase | + | |
122254 | DNase | - | |
122254 | caseinase | - | 3.4.21.50 |
122254 | catalase | + | 1.11.1.6 |
122254 | tween esterase | + | |
122254 | gamma-glutamyltransferase | + | 2.3.2.2 |
122254 | lecithinase | - | |
122254 | lipase | - | |
122254 | lysine decarboxylase | - | 4.1.1.18 |
122254 | ornithine decarboxylase | - | 4.1.1.17 |
122254 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
122254 | tryptophan deaminase | - | |
122254 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122254 | - | + | + | + | - | + | - | - | - | + | - | + | - | - | + | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122254 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|
5460 | wall of a childrens care center | Finland | FIN | Europe | ||
67772 | Wall of a childrens care center | Finland | FIN | Europe | 2002 | |
122254 | Wall of a children car centre | Finland | FIN | Europe | 1998 |
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #House
taxonmaps
- @ref: 69479
- File name: preview.99_3666.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1896;97_2279;98_2803;99_3666&stattab=map
- Last taxonomy: Roseomonas rosea subclade
- 16S sequence: AJ488505
- Sequence Identity:
- Total samples: 4497
- soil counts: 1063
- aquatic counts: 1087
- animal counts: 2201
- plant counts: 146
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5460 | 1 | Risk group (German classification) |
67772 | 1 | |
122254 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 5460
- description: Muricoccus roseus partial 16S rRNA gene
- accession: AJ488505
- length: 1485
- database: ena
- NCBI tax ID: 198092
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Roseomonas rosea strain DSM 14916 | 198092.3 | wgs | patric | 198092 |
66792 | Roseomonas rosea DSM 14916 | 2585427600 | draft | img | 198092 |
67772 | Roseomonas rosea DSM 14916 | GCA_900141905 | scaffold | ncbi | 198092 |
GC content
- @ref: 5460
- GC-content: 68.9
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 61.727 | no |
gram-positive | no | 97.923 | no |
anaerobic | no | 97.67 | no |
aerobic | yes | 89.741 | no |
halophile | no | 92.395 | no |
spore-forming | no | 94.841 | no |
glucose-util | yes | 83.289 | no |
flagellated | no | 87.272 | no |
thermophile | no | 95.449 | no |
glucose-ferment | no | 91.09 | no |
External links
@ref: 5460
culture collection no.: DSM 14916, CIP 107419, UCCCB4
straininfo link
- @ref: 69753
- straininfo: 113558
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12747406 | Teichococcus ludipueritiae gen. nov. sp. nov., and Muricoccus roseus gen. nov. sp. nov. representing two new genera of the alpha-1 subclass of the Proteobacteria. | Kampfer P, Andersson MA, Jackel U, Salkinoja-Salonen M | Syst Appl Microbiol | 10.1078/072320203322337272 | 2003 | Alphaproteobacteria/*classification/genetics/isolation & purification/ultrastructure, Base Composition, Base Sequence, Culture Media/chemistry, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/analysis | Genetics |
Phylogeny | 19406818 | Transfer of Teichococcus ludipueritiae and Muricoccus roseus to the genus Roseomonas, as Roseomonas ludipueritiae comb. nov. and Roseomonas rosea comb. nov., respectively, and emended description of the genus Roseomonas. | Sanchez-Porro C, Gallego V, Busse HJ, Kampfer P, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.004820-0 | 2009 | Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Methylobacteriaceae/*classification/genetics/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Phenotype |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5460 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14916) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14916 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
33791 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4853 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69753 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113558.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122254 | Curators of the CIP | Collection of Institut Pasteur (CIP 107419) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107419 |