Strain identifier

BacDive ID: 6869

Type strain: No

Species: Listeria murrayi

Strain Designation: F-9

Strain history: CIP <- 2012, A. Leclerc, Inst. Pasteur, Paris, France <- 1976, H. Seeliger, Würzburg, Germany <- H.J Welshimer & A.L Meredith

NCBI tax ID(s): 1641 (species)

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General

@ref: 8944

BacDive-ID: 6869

DSM-Number: 20596

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive

description: Listeria murrayi F-9 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from standing corn stalks and leaves.

NCBI tax id

  • NCBI tax id: 1641
  • Matching level: species

strain history

@refhistory
8944<- F. Fiedler <- ATCC <- H.J. Welshimer, F-9
119734CIP <- 2012, A. Leclerc, Inst. Pasteur, Paris, France <- 1976, H. Seeliger, Würzburg, Germany <- H.J Welshimer & A.L Meredith

doi: 10.13145/bacdive6869.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria murrayi
  • full scientific name: Listeria murrayi Welshimer and Meredith 1971 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Listeria grayi subsp. murrayi

@ref: 8944

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria grayi

full scientific name: Listeria grayi Errebo Larsen and Seeliger 1966 emend. Rocourt et al. 1992

strain designation: F-9

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
119734positiverod-shapedyes

colony morphology

@reftype of hemolysisincubation period
8944gamma1-2 days
119734

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8944BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
32790MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119734CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45
119734CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
8944positivegrowth37mesophilic
32790positivegrowth30mesophilic
119734positivegrowth5-45

Physiology and metabolism

oxygen tolerance

  • @ref: 119734
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481yes91
69480no99.809

murein

  • @ref: 8944
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
119734esculin+hydrolysis4853
119734nitrate+reduction17632
119734nitrite-reduction16301
119734nitrate+respiration17632
68376esculin+hydrolysis4853
68376D-arabitol+builds acid from18333
68376D-xylose+builds acid from65327
68376L-rhamnose+builds acid from62345
68376methyl alpha-D-glucopyranoside+builds acid from320061
68376D-ribose+builds acid from16988
68376glucose 1-phosphate-builds acid from29042
68376D-tagatose-builds acid from16443

antibiotic resistance

  • @ref: 119734
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 119734
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 119734
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
8944catalase-1.11.1.6
8944cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68376alpha-mannosidase+3.2.1.24
68376beta-glucosidase+3.2.1.21
119734oxidase-
119734beta-galactosidase-3.2.1.23
119734alcohol dehydrogenase-1.1.1.1
119734catalase+1.11.1.6
119734lysine decarboxylase-4.1.1.18
119734ornithine decarboxylase-4.1.1.17
119734urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119734--++-+----++---+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119734+---+----++++-+--+-+-++++++++--+---+-++-+/----+----

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
8944++++++++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119734++-++----+-----+-++----+-------+-+-------------------------+---------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
8944standing corn stalks and leaves
119734Plant, Vegetation standing corn stalks and leavesUnited States of AmericaUSANorth America1971

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)
#Host Body-Site#Plant#Stem (Branch)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_1999;98_2459;99_3208&stattab=map
  • Last taxonomy: Listeria grayi subclade
  • 16S sequence: JN852815
  • Sequence Identity:
  • Total samples: 230
  • soil counts: 18
  • aquatic counts: 43
  • animal counts: 157
  • plant counts: 12

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89441Risk group (German classification)
1197341Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Listeria grayi partial 16S rRNA gene, strain CECT 942AJ5155211010ena1641
20218Listeria grayi strain ATCC 25401 16S ribosomal RNA gene, partial sequenceJN8528151414ena1641
20218L.murrayi gene for 16S ribosomal RNAX561541494ena1641

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Listeria grayi NCTC 10812GCA_900638015completencbi1641
66792Listeria grayi strain NCTC 108121641.14completepatric1641
66792Listeria grayi NCTC 108122896525116completeimg1641

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes91no
flagellatedno63.202no
gram-positiveyes93.795no
anaerobicno97.774no
aerobicno85.043no
halophileyes74.508no
spore-formingno68.564no
thermophileno99.179yes
glucose-utilyes85.593no
motileyes74.649no
glucose-fermentyes69.97no

External links

@ref: 8944

culture collection no.: DSM 20596, ATCC 25401, CIP 76124, NCTC 10812, CIP 76.124, CCM 5990, SLCC 4426, CLIP 12515

straininfo link

  • @ref: 76334
  • straininfo: 92441

literature

  • Pubmed-ID: 23194802
  • title: The Murein Types of Listeria grayi, Listeria murrayi and Listeria denitrificans.
  • authors: Fiedler F, Seger J
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/S0723-2020(83)80002-2
  • year: 1983

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8944Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20596)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20596
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32790Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10904
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68376Automatically annotated from API LIST
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76334Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92441.1StrainInfo: A central database for resolving microbial strain identifiers
119734Curators of the CIPCollection of Institut Pasteur (CIP 76.124)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2076.124