Strain identifier

BacDive ID: 6859

Type strain: Yes

Species: Periweissella fabaria

Strain Designation: 257, KDB-2008

Strain history: <- L. De Vuyst, Vrije Univ. Brussels, Belgium <- N. Camu; 257

NCBI tax ID(s): 546157 (species)

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General

@ref: 15692

BacDive-ID: 6859

DSM-Number: 21416

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Periweissella fabaria 257 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from spontaneously fermented cocoa bean heaps.

NCBI tax id

  • NCBI tax id: 546157
  • Matching level: species

strain history

  • @ref: 15692
  • history: <- L. De Vuyst, Vrije Univ. Brussels, Belgium <- N. Camu; 257

doi: 10.13145/bacdive6859.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Periweissella
  • species: Periweissella fabaria
  • full scientific name: Periweissella fabaria (De Bruyne et al. 2010) Bello et al. 2022

  • synonyms

    • @ref: 20215
    • synonym: Weissella fabaria

@ref: 15692

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Periweissella

species: Periweissella fabaria

full scientific name: Periweissella fabaria (De Bruyne et al. 2010) Bello et al. 2022

strain designation: 257, KDB-2008

type strain: yes

Morphology

cell morphology

  • @ref: 29712
  • gram stain: positive
  • cell length: 2.5 µm
  • cell width: 1 µm
  • cell shape: coccus-shaped
  • motility: no

pigmentation

  • @ref: 29712
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15692
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15692positivegrowth30mesophilic
29712positivegrowth15-37
29712positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
29712positivegrowth05-09alkaliphile
29712positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15692microaerophile
29712facultative anaerobe

spore formation

  • @ref: 29712
  • spore formation: no

murein

  • @ref: 15692
  • murein short key: A11.13
  • type: A3alpha L-Lys-L-Ala-L-Ser

observation

  • @ref: 29712
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2971217057cellobiose+carbon source
2971229864mannitol+carbon source
2971237684mannose+carbon source
2971227082trehalose+carbon source
297124853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
15692-----------+++--------+--+-+----+------+/-----------

Isolation, sampling and environmental information

isolation

  • @ref: 15692
  • sample type: spontaneously fermented cocoa bean heaps
  • geographic location: New Tafo
  • country: Ghana
  • origin.country: GHA
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Environmental#Microbial community
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_101836.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_101836&stattab=map
  • Last taxonomy: Weissella
  • 16S sequence: FM179678
  • Sequence Identity:
  • Total samples: 2186
  • soil counts: 139
  • aquatic counts: 291
  • animal counts: 1457
  • plant counts: 299

Safety information

risk assessment

  • @ref: 15692
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15692
  • description: Weissella fabaria partial 16S rRNA gene, type strain 257T
  • accession: FM179678
  • length: 1536
  • database: ena
  • NCBI tax ID: 546157

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Periweissella fabaria LMG 24289GCA_023657385contigncbi546157
66792Periweissella fabaria LMG 24289 substr. LMG 24289GCA_918814575contigncbi546157
66792Weissella fabaria strain LMG 24289546157.5wgspatric546157

GC content

@refGC-contentmethod
1569238.2high performance liquid chromatography (HPLC)
2971238.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes93.412no
anaerobicno88.884no
halophileyes84.656no
spore-formingno92.459yes
glucose-utilyes87.93no
thermophileno99.66no
aerobicno93.112yes
motileno78.75yes
flagellatedno92.335yes
glucose-fermentyes83.979no

External links

@ref: 15692

culture collection no.: DSM 21416, LMG 24289

straininfo link

  • @ref: 76324
  • straininfo: 291237

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19801391Weissella fabaria sp. nov., from a Ghanaian cocoa fermentation.De Bruyne K, Camu N, De Vuyst L, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.019323-02009Bacterial Proteins/genetics, Cacao/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, *Fermentation, Leuconostocaceae/classification/genetics/*isolation & purification/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny22922535Characterization of strains of Weissella fabalis sp. nov. and Fructobacillus tropaeoli from spontaneous cocoa bean fermentations.Snauwaert I, Papalexandratou Z, De Vuyst L, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.040311-02012Base Composition, Brazil, Cacao/*microbiology, DNA, Bacterial/genetics, Ecuador, Fermentation, *Food Microbiology, Genes, Bacterial, Leuconostocaceae/*classification/genetics/isolation & purification, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purificationBiotechnology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15692Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21416)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21416
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29712Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2609528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76324Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291237.1StrainInfo: A central database for resolving microbial strain identifiers