Archive BacDiveID:10.13145/bacdive6853.20221219.7.1

Strain identifier

BacDive ID: 6853

Type strain:

Species: Weissella soli

Strain Designation: Mi268

Strain history: LMG 20113 <-- S. Roos Mi 268 <-- J. Magnusson.

NCBI tax ID(s): 155866 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 5344

BacDive-ID: 6853

DSM-Number: 14420

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, psychrophilic

description: Weissella soli Mi268 is an anaerobe, psychrophilic bacterium that was isolated from garden soil.

NCBI tax id

NCBI tax id: 155866
Matching level: species

strain history

doi: 10.13145/bacdive6853.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella soli
full scientific name: Weissella soli Magnusson et al. 2002

@ref: 5344

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Weissella

species: Weissella soli

full scientific name: Weissella soli Magnusson et al. 2002

strain designation: Mi268

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 94.82

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
5344	MRS MEDIUM (DSMZ Medium 11)	yes	https://mediadive.dsmz.de/medium/11	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38216	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@ref	growth	type	temperature	range
5344	positive	growth	20	psychrophilic
38216	positive	growth	30	mesophilic
57286	positive	growth	37	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance
57286	anaerobe
57286	microaerophile

spore formation

@ref: 69480
spore formation: no
confidence: 99.175

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 87.669

Isolation, sampling and environmental information

isolation

@ref	sample type	country	origin.country	continent	geographic location
5344	garden soil	Sweden	SWE	Europe
57286	Garden soil	Sweden	SWE	Europe	Uppsala
67770	Garden soil

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

taxonmaps

@ref: 69479
File name: preview.99_12599.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_1590;97_7727;98_9498;99_12599&stattab=map
Last taxonomy: Weissella soli subclade
16S sequence: LC258131
Sequence Identity:
Total samples: 2102
soil counts: 112
aquatic counts: 238
animal counts: 1582
plant counts: 170

Safety information

risk assessment

@ref: 5344
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
67770	Weissella soli 16S ribosomal RNA gene, complete sequence	AY028260	1558	ena	155866
67770	Weissella soli gene for 16S ribosomal RNA, partial sequence, strain: JCM 12536	LC258131	1518	ena	155866

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Weissella soli NBRC 106074	GCA_007991555	contig	ncbi	155866
66792	Weissella soli strain CCUG 46608	155866.9	wgs	patric	155866
66792	Weissella soli strain NBRC 106074	155866.8	wgs	patric	155866
67770	Weissella soli CCUG 46608	GCA_012396465	contig	ncbi	155866

GC content

@ref: 5344
GC-content: 43
method: high performance liquid chromatography (HPLC)

External links

@ref: 5344

culture collection no.: DSM 14420, LMG 20113, CCUG 46608, JCM 12536, KCTC 3789, NBRC 106074

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/304292
20218	http://www.straininfo.net/strains/278751

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	12054246	Weissella soli sp. nov., a lactic acid bacterium isolated from soil.	Magnusson J, Jonsson H, Schnurer J, Roos S	Int J Syst Evol Microbiol	10.1099/00207713-52-3-831	2002	Bacterial Proteins/analysis, DNA, Ribosomal/analysis, Gram-Positive Rods/chemistry/classification/isolation & purification/metabolism, Lactic Acid/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology	Metabolism
Phylogeny	19060047	Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation.	De Bruyne K, Camu N, Lefebvre K, De Vuyst L, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65853-0	2008	Cacao/metabolism/microbiology, Fermentation, Ghana, Lactobacillaceae/classification/genetics/isolation & purification/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Species Specificity	Genetics
Phylogeny	22843715	Weissella oryzae sp. nov., isolated from fermented rice grains.	Tohno M, Kitahara M, Inoue H, Uegaki R, Irisawa T, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.043612-0	2012	Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Molecular Sequence Data, Oryza/microbiology, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purification	Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
5344	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14420)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-14420
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
38216	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/5035
57286	Curators of the CCUG	Culture Collection University of Gothenburg (CCUG) (CCUG 46608)	https://www.ccug.se/strain?id=46608
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)