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Strain identifier

BacDive ID: 6853

Type strain: Yes

Species: Weissella soli

Strain Designation: Mi268

Strain history: LMG 20113 <-- S. Roos Mi 268 <-- J. Magnusson.

NCBI tax ID(s): 155866 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5344

BacDive-ID: 6853

DSM-Number: 14420

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, psychrophilic

description: Weissella soli Mi268 is an anaerobe, psychrophilic bacterium that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 155866
  • Matching level: species

strain history

doi: 10.13145/bacdive6853.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Leuconostocaceae
  • genus: Weissella
  • species: Weissella soli
  • full scientific name: Weissella soli Magnusson et al. 2002

@ref: 5344

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Weissella

species: Weissella soli

full scientific name: Weissella soli Magnusson et al. 2002

strain designation: Mi268

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 94.82

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5344MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38216MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5344positivegrowth20psychrophilic
38216positivegrowth30mesophilic
57286positivegrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57286anaerobe
57286microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.175

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 87.669

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
5344garden soilSwedenSWEEurope
57286Garden soilSwedenSWEEuropeUppsala
67770Garden soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

taxonmaps

  • @ref: 69479
  • File name: preview.99_12599.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_1590;97_7727;98_9498;99_12599&stattab=map
  • Last taxonomy: Weissella soli subclade
  • 16S sequence: LC258131
  • Sequence Identity:
  • Total samples: 2102
  • soil counts: 112
  • aquatic counts: 238
  • animal counts: 1582
  • plant counts: 170

Safety information

risk assessment

  • @ref: 5344
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Weissella soli 16S ribosomal RNA gene, complete sequenceAY0282601558ena155866
67770Weissella soli gene for 16S ribosomal RNA, partial sequence, strain: JCM 12536LC2581311518ena155866

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Weissella soli NBRC 106074GCA_007991555contigncbi155866
66792Weissella soli strain CCUG 46608155866.9wgspatric155866
66792Weissella soli strain NBRC 106074155866.8wgspatric155866
67770Weissella soli CCUG 46608GCA_012396465contigncbi155866

GC content

  • @ref: 5344
  • GC-content: 43
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5344

culture collection no.: DSM 14420, LMG 20113, CCUG 46608, JCM 12536, KCTC 3789, NBRC 106074

straininfo link

@refpassport
20218http://www.straininfo.net/strains/304292
20218http://www.straininfo.net/strains/278751

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12054246Weissella soli sp. nov., a lactic acid bacterium isolated from soil.Magnusson J, Jonsson H, Schnurer J, Roos SInt J Syst Evol Microbiol10.1099/00207713-52-3-8312002Bacterial Proteins/analysis, DNA, Ribosomal/analysis, Gram-Positive Rods/chemistry/*classification/isolation & purification/metabolism, Lactic Acid/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyMetabolism
Phylogeny19060047Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation.De Bruyne K, Camu N, Lefebvre K, De Vuyst L, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.65853-02008Cacao/*metabolism/*microbiology, *Fermentation, Ghana, Lactobacillaceae/*classification/genetics/isolation & purification/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Species SpecificityGenetics
Phylogeny22843715Weissella oryzae sp. nov., isolated from fermented rice grains.Tohno M, Kitahara M, Inoue H, Uegaki R, Irisawa T, Ohkuma M, Tajima KInt J Syst Evol Microbiol10.1099/ijs.0.043612-02012Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Molecular Sequence Data, Oryza/*microbiology, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5344Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14420)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14420
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38216Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5035
57286Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46608)https://www.ccug.se/strain?id=46608
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)