Strain identifier

BacDive ID: 6765

Type strain: Yes

Species: Legionella lansingensis

Strain Designation: 1677-MI-H

Strain history: CIP <- 1992, W.L. Thacker, CDC <- J.W. Dyke, Sparrow Hosp., Michigan, USA: strain 1677-MI-H

NCBI tax ID(s): 1122164 (strain), 45067 (species)

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General

@ref: 8173

BacDive-ID: 6765

DSM-Number: 19556

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped

description: Legionella lansingensis 1677-MI-H is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from bronchoscopy washings of patient with chronic lymphocytic leukemia.

NCBI tax id

NCBI tax idMatching level
45067species
1122164strain

strain history

@refhistory
8173<- CIP <- ATCC <- W. L. Thacker <- J. W. Dyke; 1677-MI-H
120557CIP <- 1992, W.L. Thacker, CDC <- J.W. Dyke, Sparrow Hosp., Michigan, USA: strain 1677-MI-H

doi: 10.13145/bacdive6765.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella lansingensis
  • full scientific name: Legionella lansingensis Thacker et al. 1994

@ref: 8173

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella lansingensis

full scientific name: Legionella lansingensis Thacker et al. 1994

strain designation: 1677-MI-H

type strain: yes

Morphology

cell morphology

  • @ref: 120557
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8173BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
34346MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
120557CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
8173positivegrowth37mesophilic
34346positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8173
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12055717632nitrate-reduction
12055716301nitrite-reduction

metabolite production

  • @ref: 120557
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
120557oxidase-
120557catalase-1.11.1.6
120557urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    50483C14:00.214
    50483C15:01.815
    50483C16:06.116
    50483C17:00.917
    50483C18:00.218
    50483C19:00.319
    50483C20:00.720
    50483C14:0 ISO0.913.618
    50483C15:0 2OH0.216.217
    50483C15:0 ANTEISO2514.711
    50483C15:0 ISO214.621
    50483C15:1 ω6c1.114.856
    50483C16:0 iso1415.626
    50483C16:1 ISO H1.715.461
    50483C16:1 ω7c6.915.819
    50483C17:0 anteiso26.416.722
    50483C17:0 CYCLO0.916.888
    50483C17:0 iso3.916.629
    50483C17:1 ω9c ANTEISO5.816.525
    50483C17:1 ω9c ISO1.216.416
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120557-+---++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
8173bronchoscopy washings of patient with chronic lymphocytic leukemiaMichigan, LansingUSAUSANorth America
50483Human bronchus,54-yr-old woman,pneumoniaMichigan,LansingUSAUSANorth America1987-02-01
120557Human, Bronchoscopy washingMichiganUnited States of AmericaUSANorth America1987

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body-Site#Oral cavity and airways
#Host Body Product#Oral cavity and Airways#Bronchial wash

taxonmaps

  • @ref: 69479
  • File name: preview.99_4159.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_2107;97_2539;98_3142;99_4159&stattab=map
  • Last taxonomy: Legionella
  • 16S sequence: HF937256
  • Sequence Identity:
  • Total samples: 104
  • soil counts: 34
  • aquatic counts: 60
  • animal counts: 8
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
81732Risk group (German classification)
1205572Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella lansingensis strain MDC1595 16S ribosomal RNA gene, partial sequenceJF720421525ena45067
8173Legionella lansingensis partial 16S rRNA gene, type strain DSM 19556THF9372561533ena45067

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella lansingensis DSM 19556 = ATCC 49751GCA_000622185scaffoldncbi1122164
66792Legionella lansingensis ATCC 49751GCA_001467795scaffoldncbi45067
66792Legionella lansingensis 1677-MI-HGCA_900640195scaffoldncbi45067
66792Legionella lansingensis DSM 19556 = ATCC 497511122164.4wgspatric1122164
66792Legionella lansingensis strain ATCC 4975145067.4wgspatric45067
66792Legionella lansingensis ATCC 497512558309107draftimg1122164
66792Legionella lansingensis ATCC 497512693429527draftimg1122164

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno76.43no
flagellatedno95.626no
gram-positiveno98.483no
anaerobicno98.505no
halophileno84.2no
spore-formingno92.384no
glucose-utilyes63.162no
aerobicno85.853yes
thermophileno95.286no
glucose-fermentno86.759no

External links

@ref: 8173

culture collection no.: DSM 19556, ATCC 49751, CCUG 31227 B, CIP 103542

straininfo link

  • @ref: 76235
  • straininfo: 42662

literature

  • topic: Phylogeny
  • Pubmed-ID: 1401005
  • title: Legionella lansingensis sp. nov. isolated from a patient with pneumonia and underlying chronic lymphocytic leukemia.
  • authors: Thacker WL, Dyke JW, Benson RF, Havlichek DH Jr, Robinson-Dunn B, Stiefel H, Schneider W, Moss CW, Mayberry WR, Brenner DJ
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.30.9.2398-2401.1992
  • year: 1992
  • mesh: Agglutination Tests, DNA, Bacterial/genetics, Female, Humans, Legionella/classification/*isolation & purification/physiology, Leukemia, Lymphocytic, Chronic, B-Cell/complications/*microbiology, Middle Aged, Nucleic Acid Hybridization, Pneumonia/complications/*microbiology, Sequence Homology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8173Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19556)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19556
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34346Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15351
50483Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31227 B)https://www.ccug.se/strain?id=31227
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76235Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42662.1StrainInfo: A central database for resolving microbial strain identifiers
120557Curators of the CIPCollection of Institut Pasteur (CIP 103542)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103542