Strain identifier

BacDive ID: 6755

Type strain: Yes

Species: Legionella israelensis

Strain history: CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- D.J. Brenner, CDC, Atlanta, Georgia, USA: strain Bercovier 4 <- H. Bercovier

NCBI tax ID(s): 1122162 (strain), 454 (species)

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General

@ref: 7984

BacDive-ID: 6755

DSM-Number: 19235

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, human pathogen

description: Legionella israelensis DSM 19235 is a Gram-negative human pathogen that was isolated from water.

NCBI tax id

NCBI tax idMatching level
454species
1122162strain

strain history

@refhistory
7984<- H. E. Müller <- ATCC <- D. J. Brenner, CDC; Bercovier 4 <- H. Bercovier
120286CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- D.J. Brenner, CDC, Atlanta, Georgia, USA: strain Bercovier 4 <- H. Bercovier

doi: 10.13145/bacdive6755.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella israelensis
  • full scientific name: Legionella israelensis Bercovier et al. 1986

@ref: 7984

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella israelensis

full scientific name: Legionella israelensis Bercovier et al. 1986

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
120286negativerod-shapedno
69480negative97.494

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_19235_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7984BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
40845MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
120286CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperature
7984positivegrowth37
40845positivegrowth37
50431positivegrowth37

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7984waterIsraelISRAsia
50431WaterIsraelISRAsia
120286Environment, WaterIsraelISRAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_8269.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_3802;97_4688;98_6022;99_8269&stattab=map
  • Last taxonomy: Legionella israelensis subclade
  • 16S sequence: Z32640
  • Sequence Identity:
  • Total samples: 536
  • soil counts: 139
  • aquatic counts: 259
  • animal counts: 85
  • plant counts: 53

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7984yes, in single cases1Risk group (German classification)
1202862Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella israelensis strain MDC1592 16S ribosomal RNA gene, partial sequenceJF720422524nuccore454
20218L.israelensis (Bercovier-4) gene for 16S ribosomal RNAZ326401464nuccore454
7984L.israelensis (ATCC 43119) gene for 16S rRNAX734081466nuccore454

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella israelensis NCTC12010GCA_900452605contigncbi454
66792Legionella israelensis DSM 19235GCA_900101805scaffoldncbi1122162
66792Legionella israelensis DSM 192351122162.4wgspatric1122162
66792Legionella israelensis strain Bercovier 4454.4wgspatric454
66792Legionella israelensis strain Bercovier 4454.8completepatric454
66792Legionella israelensis strain NCTC12010454.6wgspatric454
66792Legionella israelensis DSM 192352599185260draftimg1122162

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.494no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.119no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.052no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no73.471no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.554no
69480flagellatedmotile2+Ability to perform flagellated movementno60.038no

External links

@ref: 7984

culture collection no.: DSM 19235, ATCC 43119, CCUG 31115, CIP 103879, NCTC 12010, Bercovier 4

straininfo link

  • @ref: 76225
  • straininfo: 41659

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7984Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19235)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19235
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40845Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15725
50431Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31115)https://www.ccug.se/strain?id=31115
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
76225Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41659.1StrainInfo: A central database for resolving microbial strain identifiers
120286Curators of the CIPCollection of Institut Pasteur (CIP 103879)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103879