Strain identifier

BacDive ID: 6755

Type strain: Yes

Species: Legionella israelensis

Strain history: CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- D.J. Brenner, CDC, Atlanta, Georgia, USA: strain Bercovier 4 <- H. Bercovier

NCBI tax ID(s): 1122162 (strain), 454 (species)

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General

@ref: 7984

BacDive-ID: 6755

DSM-Number: 19235

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Legionella israelensis DSM 19235 is a mesophilic, Gram-negative, rod-shaped human pathogen that was isolated from water.

NCBI tax id

NCBI tax idMatching level
1122162strain
454species

strain history

@refhistory
7984<- H. E. Müller <- ATCC <- D. J. Brenner, CDC; Bercovier 4 <- H. Bercovier
120286CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- D.J. Brenner, CDC, Atlanta, Georgia, USA: strain Bercovier 4 <- H. Bercovier

doi: 10.13145/bacdive6755.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella israelensis
  • full scientific name: Legionella israelensis Bercovier et al. 1986

@ref: 7984

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella israelensis

full scientific name: Legionella israelensis Bercovier et al. 1986

type strain: yes

Morphology

cell morphology

  • @ref: 120286
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_19235_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19235_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7984BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
40845MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
120286CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
7984positivegrowth37mesophilic
40845positivegrowth37mesophilic
50431positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7984waterIsraelISRAsia
50431WaterIsraelISRAsia
120286Environment, WaterIsraelISRAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_8269.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_3802;97_4688;98_6022;99_8269&stattab=map
  • Last taxonomy: Legionella israelensis subclade
  • 16S sequence: Z32640
  • Sequence Identity:
  • Total samples: 536
  • soil counts: 139
  • aquatic counts: 259
  • animal counts: 85
  • plant counts: 53

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7984yes, in single cases1Risk group (German classification)
1202862Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella israelensis strain MDC1592 16S ribosomal RNA gene, partial sequenceJF720422524ena454
20218L.israelensis (Bercovier-4) gene for 16S ribosomal RNAZ326401464ena454
7984L.israelensis (ATCC 43119) gene for 16S rRNAX734081466ena454

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella israelensis NCTC12010GCA_900452605contigncbi454
66792Legionella israelensis DSM 19235GCA_900101805scaffoldncbi1122162
66792Legionella israelensis DSM 192351122162.4wgspatric1122162
66792Legionella israelensis strain Bercovier 4454.4wgspatric454
66792Legionella israelensis strain Bercovier 4454.8completepatric454
66792Legionella israelensis strain NCTC12010454.6wgspatric454
66792Legionella israelensis DSM 192352599185260draftimg1122162

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.616no
anaerobicno97.801no
halophileno65.833no
spore-formingno94.597no
glucose-utilyes73.66no
aerobicno86.252no
flagellatedno92.445no
thermophileno98.144no
motileyes64.769no
glucose-fermentno88.501no

External links

@ref: 7984

culture collection no.: DSM 19235, ATCC 43119, CCUG 31115, CIP 103879, NCTC 12010, Bercovier 4

straininfo link

  • @ref: 76225
  • straininfo: 41659

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7984Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19235)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19235
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40845Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15725
50431Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31115)https://www.ccug.se/strain?id=31115
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76225Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41659.1StrainInfo: A central database for resolving microbial strain identifiers
120286Curators of the CIPCollection of Institut Pasteur (CIP 103879)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103879