Strain identifier

BacDive ID: 6672

Type strain: Yes

Species: Liquorilactobacillus hordei

Strain Designation: UCC128

Strain history: CIP <- 2008, DSMZ <- S. Rouse, Ireland Nat. Univ., Ireland: strain UCC128

NCBI tax ID(s): 1423759 (strain), 468911 (species)

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General

@ref: 8145

BacDive-ID: 6672

DSM-Number: 19519

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Liquorilactobacillus hordei UCC128 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from malted barley.

NCBI tax id

NCBI tax idMatching level
468911species
1423759strain

strain history

@refhistory
8145<- S. Rouse; UCC128
67770DSM 19519 <-- S. Rouse UCC128.
119965CIP <- 2008, DSMZ <- S. Rouse, Ireland Nat. Univ., Ireland: strain UCC128

doi: 10.13145/bacdive6672.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Liquorilactobacillus
  • species: Liquorilactobacillus hordei
  • full scientific name: Liquorilactobacillus hordei (Rouse et al. 2008) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus hordei

@ref: 8145

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Liquorilactobacillus

species: Liquorilactobacillus hordei

full scientific name: Liquorilactobacillus hordei (Rouse et al. 2008) Zheng et al. 2020

strain designation: UCC128

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32497positive1 µm0.5-0.8 µmrod-shapedno
69480positive100

pigmentation

  • @ref: 32497
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8145MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37667MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119965CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8145positivegrowth30mesophilic
32497positivegrowth20-40
32497positiveoptimum30mesophilic
37667positivegrowth30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32497positivegrowth04-08acidophile
32497positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8145microaerophile
32497facultative anaerobe

spore formation

@refspore formationconfidence
32497yes
69481yes98
69480no99.995

observation

  • @ref: 32497
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3249717057cellobiose+carbon source
3249729864mannitol+carbon source
3249717814salicin+carbon source
324974853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837143943methyl alpha-D-mannoside+builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8145-----------+++----+-++--+++++--+-------+----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8145malted barleyBelgiumBELEurope
67770Malted barleyBelgiumBELEurope
119965Malted barleyBelgiumBELEurope

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Engineered#Treatment
#Engineered#Food production#Beverage
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_4379.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1207;97_1430;98_2298;99_4379&stattab=map
  • Last taxonomy: Liquorilactobacillus
  • 16S sequence: LC519866
  • Sequence Identity:
  • Total samples: 1920
  • soil counts: 144
  • aquatic counts: 161
  • animal counts: 1322
  • plant counts: 293

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
81451Risk group (German classification)
1199651Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8145Lactobacillus hordei strain UCC128 16S ribosomal RNA gene, partial sequenceEU0748501406ena468911
67770Lactobacillus hordei JCM 16179 gene for 16S rRNA, partial sequenceLC5198661508ena468911

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Liquorilactobacillus hordei DSM 19519GCA_019443985chromosomencbi1423759
66792Lactobacillus hordei DSM 195191423759.3wgspatric1423759
66792Liquorilactobacillus hordei DSM 195191423759.13completepatric1423759
66792Liquorilactobacillus hordei DSM 195192663762946draftimg1423759
67770Liquorilactobacillus hordei DSM 19519GCA_001434845scaffoldncbi1423759

GC content

@refGC-contentmethod
814536.5
6777034.8genome sequence analysis
6777036.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes98no
motileyes56.069yes
gram-positiveyes92.969no
anaerobicno89.904yes
halophileyes65.798no
spore-formingno87.022yes
thermophileno98.503yes
glucose-utilyes89.416no
aerobicno94.818yes
flagellatedno84.934no
glucose-fermentyes84.818no

External links

@ref: 8145

culture collection no.: DSM 19519, CIP 109892, JCM 16179, LMG 24241

straininfo link

  • @ref: 76146
  • straininfo: 310325

literature

  • topic: Phylogeny
  • Pubmed-ID: 18768596
  • title: Lactobacillus hordei sp. nov., a bacteriocinogenic strain isolated from malted barley.
  • authors: Rouse S, Canchaya C, van Sinderen D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65584-0
  • year: 2008
  • mesh: Bacterial Typing Techniques, Bacteriocins/*biosynthesis, Catalase/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Hordeum/*microbiology, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8145Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19519)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19519
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32497Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2871728776041
37667Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7687
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76146Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID310325.1StrainInfo: A central database for resolving microbial strain identifiers
119965Curators of the CIPCollection of Institut Pasteur (CIP 109892)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109892