Strain identifier
BacDive ID: 6620
Type strain: 
Species: Lactobacillus ultunensis
Strain Designation: Kx293C1
Strain history: <- S. Roos; Kx293C1
NCBI tax ID(s): 227945 (species)
version 8.1 (current version)
General
@ref: 6240
BacDive-ID: 6620
DSM-Number: 16048
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Lactobacillus ultunensis Kx293C1 is an anaerobe, mesophilic bacterium that was isolated from gastric biopsies, human stomach mucosa.
NCBI tax id
- NCBI tax id: 227945
- Matching level: species
strain history
- @ref: 6240
- history: <- S. Roos; Kx293C1
doi: 10.13145/bacdive6620.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus ultunensis
- full scientific name: Lactobacillus ultunensis Roos et al. 2005
@ref: 6240
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus ultunensis
full scientific name: Lactobacillus ultunensis Roos et al. 2005
strain designation: Kx293C1
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.828 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 6240
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 6240
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 6240
- oxygen tolerance: anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 6240
- sample type: gastric biopsies, human stomach mucosa
- geographic location: Kalix
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Biopsy |
| #Host | #Human | |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
Safety information
risk assessment
- @ref: 6240
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactobacillus ultunensis Kx293C1 | GCA_016647595 | complete | ncbi | 227945 |
| 66792 | Lactobacillus ultunensis strain Kx293C1 | 227945.7 | complete | patric | 227945 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.884 | no |
| gram-positive | yes | 95.791 | no |
| anaerobic | yes | 88.603 | yes |
| aerobic | no | 97.838 | no |
| halophile | yes | 84.6 | no |
| spore-forming | no | 95.94 | no |
| thermophile | no | 99.556 | yes |
| glucose-util | yes | 92.829 | no |
| motile | no | 96.39 | no |
| glucose-ferment | yes | 90.432 | no |
External links
@ref: 6240
culture collection no.: DSM 16048, CCUG 48461, LMG 22490
straininfo link
- @ref: 76094
- straininfo: 133964
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6240 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16048) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16048 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 76094 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID133964.1 | StrainInfo: A central database for resolving microbial strain identifiers |