Strain identifier
BacDive ID: 6563
Type strain: 
Species: Limosilactobacillus pontis
Strain history: <- LMG <- P. Stolz <- G. Böcker, LTH 1735
NCBI tax ID(s): 35787 (species)
version 9 (current version)
General
@ref: 3289
BacDive-ID: 6563
DSM-Number: 8476
keywords: 16S sequence, Bacteria, anaerobe
description: Limosilactobacillus pontis DSM 8476 is an anaerobe bacterium that was isolated from rye sourdough.
NCBI tax id
- NCBI tax id: 35787
- Matching level: species
strain history
- @ref: 3289
- history: <- LMG <- P. Stolz <- G. Böcker, LTH 1735
doi: 10.13145/bacdive6563.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Limosilactobacillus
- species: Limosilactobacillus pontis
- full scientific name: Limosilactobacillus pontis (Vogel et al. 1994) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus pontis
@ref: 3289
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Limosilactobacillus
species: Limosilactobacillus pontis
full scientific name: Limosilactobacillus pontis (Vogel et al. 1994) Zheng et al. 2020
type strain: no
Culture and growth conditions
culture medium
- @ref: 3289
- name: LACTOBACILLUS MEDIUM III (DSMZ Medium 638)
- growth: yes
- link: https://mediadive.dsmz.de/medium/638
- composition: Name: LACTOBACILLUS MEDIUM III (DSMZ Medium 638) Composition: Tryptone 10.0 g/l Glucose 7.0 g/l Maltose 7.0 g/l Fructose 7.0 g/l Na-acetate x 3 H2O 5.0 g/l Yeast extract 5.0 g/l Meat extract 5.0 g/l K2HPO4 x 3 H2O 2.6 g/l (NH4)2 citrate 2.0 g/l Na-gluconate 2.0 g/l L-Cysteine HCl x H2O 0.5 g/l MgSO4 x 7 H2O 0.1 g/l MnSO4 x 4 H2O 0.05 g/l Tween 80 Distilled water
culture temp
- @ref: 3289
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 3289
- oxygen tolerance: anaerobe
murein
- @ref: 3289
- murein short key: A21.04
- type: A4ß L-Orn-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 3289
- sample type: rye sourdough
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Food |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_8168.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_369;97_416;98_5944;99_8168&stattab=map
- Last taxonomy: Limosilactobacillus
- 16S sequence: AJ422033
- Sequence Identity:
- Total samples: 38681
- soil counts: 1269
- aquatic counts: 1526
- animal counts: 35132
- plant counts: 754
Safety information
risk assessment
- @ref: 3289
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Lactobacillus pontis 16S rRNA gene, strain LMG 14188
- accession: AJ422033
- length: 1527
- database: nuccore
- NCBI tax ID: 35787
GC content
- @ref: 3289
- GC-content: 54
- method: high performance liquid chromatography (HPLC)
External links
@ref: 3289
culture collection no.: DSM 8476, ATCC 51519, LMG 14188, LTH 1735
straininfo link
- @ref: 76035
- straininfo: 8944
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3289 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8476) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8476 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76035 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID8944.1 | StrainInfo: A central database for resolving microbial strain identifiers |