Strain identifier

BacDive ID: 6483

Type strain: No

Species: Liquorilactobacillus mali

Strain Designation: 239

Strain history: CIP <- 1988, ATCC <- H. Nonomura: strain 239, Lactobacillus yamanashiensis subsp. yamanashiensis

NCBI tax ID(s): 1618 (species)

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General

@ref: 8852

BacDive-ID: 6483

DSM-Number: 20483

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Liquorilactobacillus mali 239 is a mesophilic, Gram-positive bacterium that was isolated from wine must.

NCBI tax id

  • NCBI tax id: 1618
  • Matching level: species

strain history

@refhistory
8852<- ATCC <- H. Nonomura, 239 (Lactobacillus yamanashiensis)
67770ATCC 27304 <-- H. Nonomura 239 (Lactobacillus yamanashiensis).
120757CIP <- 1988, ATCC <- H. Nonomura: strain 239, Lactobacillus yamanashiensis subsp. yamanashiensis

doi: 10.13145/bacdive6483.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Liquorilactobacillus
  • species: Liquorilactobacillus mali
  • full scientific name: Liquorilactobacillus mali (Carr and Davies 1970) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus yamanashiensis subsp. mali
    20215Lactobacillus yamanashiensis
    20215Lactobacillus mali

@ref: 8852

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Liquorilactobacillus

species: Liquorilactobacillus mali

full scientific name: Liquorilactobacillus mali (Carr and Davies 1970) Zheng et al. 2020

strain designation: 239

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8852MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37119MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinusyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g)
120757CIP Medium 41yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41

culture temp

@refgrowthtypetemperaturerange
8852positivegrowth30mesophilic
37119positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.991

murein

  • @ref: 8852
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8852-----------+++----++--++++++---++-----------------

Isolation, sampling and environmental information

isolation

@refsample type
8852wine must
67770Wine must
120757Food, Wine must

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
88521Risk group (German classification)
1207571Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus mali ATCC 27304 16S ribosomal RNA gene, partial sequenceAF429519514ena1618
20218Lactobacillus mali strain ATCC 27304 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF429606513ena1618

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus mali strain ATCC 273041618.3wgspatric1618
66792Liquorilactobacillus mali ATCC 273042700989261draftimg1618
67770Liquorilactobacillus mali ATCC 27304GCA_001437155scaffoldncbi1618

GC content

  • @ref: 8852
  • GC-content: 32.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes57no
motileyes60.092no
gram-positiveyes91.997no
anaerobicno93.821no
aerobicno93.9no
halophileyes54.241no
spore-formingno91.322no
thermophileno97.061yes
glucose-utilyes90.339no
flagellatedno85.627no
glucose-fermentyes83.567no

External links

@ref: 8852

culture collection no.: DSM 20483, ATCC 27304, JCM 1153, BCRC 14058, CCM 2877, CECT 4149, CIP 103143, NRIC 1076

straininfo link

  • @ref: 75956
  • straininfo: 105419

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8852Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20483)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20483
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37119Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14908
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
75956Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID105419.1StrainInfo: A central database for resolving microbial strain identifiers
120757Curators of the CIPCollection of Institut Pasteur (CIP 103143)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103143