Strain identifier
BacDive ID: 6357
Type strain: 
Species: Hespellia porcina
Strain Designation: PC80
Strain history: <- T. R. Whitehead, National Center for Agricultural Utilization Research, USDA, Peoria, USA; PC80 <- T. R. Whitehead {1998}
NCBI tax ID(s): 180286 (species)
version 8.1 (current version)
General
@ref: 5951
BacDive-ID: 6357
DSM-Number: 15481
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped
description: Hespellia porcina PC80 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from stored swine manure.
NCBI tax id
- NCBI tax id: 180286
- Matching level: species
strain history
- @ref: 5951
- history: <- T. R. Whitehead, National Center for Agricultural Utilization Research, USDA, Peoria, USA; PC80 <- T. R. Whitehead {1998}
doi: 10.13145/bacdive6357.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Hespellia
- species: Hespellia porcina
- full scientific name: Hespellia porcina Whitehead et al. 2004
@ref: 5951
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Hespellia
species: Hespellia porcina
full scientific name: Hespellia porcina Whitehead et al. 2004
strain designation: PC80
type strain: yes
Morphology
cell morphology
- @ref: 29938
- gram stain: positive
- cell length: 1.5-4.0 µm
- cell width: 0.5-1.0 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29938
- production: yes
Culture and growth conditions
culture medium
- @ref: 5951
- name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339a
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5951 | positive | growth | 37 | mesophilic |
| 29938 | positive | optimum | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5951 | anaerobe |
| 29938 | anaerobe |
spore formation
- @ref: 29938
- spore formation: no
observation
- @ref: 29938
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29938 | 22599 | arabinose | + | carbon source |
| 29938 | 28757 | fructose | + | carbon source |
| 29938 | 17234 | glucose | + | carbon source |
| 29938 | 17306 | maltose | + | carbon source |
| 29938 | 37684 | mannose | + | carbon source |
| 29938 | 17992 | sucrose | + | carbon source |
| 29938 | 18222 | xylose | + | carbon source |
| 29938 | 4853 | esculin | + | hydrolysis |
Isolation, sampling and environmental information
isolation
- @ref: 5951
- sample type: stored swine manure
- geographic location: Illinois, Peoria
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_40284.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_2028;97_2444;98_29411;99_40284&stattab=map
- Last taxonomy: Hespellia porcina subclade
- 16S sequence: AF445239
- Sequence Identity:
- Total samples: 318
- soil counts: 10
- aquatic counts: 44
- animal counts: 261
- plant counts: 3
Safety information
risk assessment
- @ref: 5951
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5951
- description: Hespellia porcina strain PPC80 16S ribosomal RNA gene, partial sequence
- accession: AF445239
- length: 1449
- database: ena
- NCBI tax ID: 180286
GC content
- @ref: 5951
- GC-content: 43.8
External links
@ref: 5951
culture collection no.: DSM 15481, ATCC BAA 674, NRRL B-23458
straininfo link
- @ref: 75830
- straininfo: 130839
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 14742487 | Hespellia stercorisuis gen. nov., sp. nov. and Hespellia porcina sp. nov., isolated from swine manure storage pits. | Whitehead TR, Cotta MA, Collins MD, Lawson PA | Int J Syst Evol Microbiol | 10.1099/ijs.0.02719-0 | 2004 | Animals, Clostridium/*classification/genetics/isolation & purification, DNA, Ribosomal/genetics, Genes, Bacterial/genetics, Manure/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Swine/*microbiology | Genetics |
| Phylogeny | 26612136 | Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater. | Jarzembowska M, Sousa DZ, Beyer F, Zwijnenburg A, Plugge CM, Stams AJM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000791 | 2015 |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 5951 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15481) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15481 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29938 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26309 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75830 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID130839.1 | StrainInfo: A central database for resolving microbial strain identifiers |