Strain identifier
BacDive ID: 6307
Type strain: 
Species: Phycicoccus ochangensis
Strain Designation: LIb-b9
Strain history: K. S. Bae L1b-b9.
NCBI tax ID(s): 663580 (species)
version 8.1 (current version)
General
@ref: 18231
BacDive-ID: 6307
DSM-Number: 26466
keywords: 16S sequence, Bacteria, mesophilic
description: Phycicoccus ochangensis LIb-b9 is a mesophilic bacterium that was isolated from soil, potato cultivation field.
NCBI tax id
- NCBI tax id: 663580
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18231 | <- KCTC; KCTC 19695 |
| 67770 | K. S. Bae L1b-b9. |
doi: 10.13145/bacdive6307.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Phycicoccus
- species: Phycicoccus ochangensis
- full scientific name: Phycicoccus ochangensis Kim et al. 2012
@ref: 18231
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Phycicoccus
species: Phycicoccus ochangensis
full scientific name: Phycicoccus ochangensis
strain designation: LIb-b9
type strain: yes
Morphology
colony morphology
- @ref: 18231
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 18231
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18231 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18231 | soil, potato cultivation field | Ochang | Republic of Korea | KOR | Asia |
| 67770 | Soil of a potato cultivation field | Ochang | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_39147.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_670;97_776;98_900;99_39147&stattab=map
- Last taxonomy: Intrasporangiaceae
- 16S sequence: GQ344405
- Sequence Identity:
- Total samples: 1816
- soil counts: 967
- aquatic counts: 265
- animal counts: 449
- plant counts: 135
Sequence information
16S sequences
- @ref: 18231
- description: Phycicoccus ochangensis strain L1b-b9 16S ribosomal RNA gene, partial sequence
- accession: GQ344405
- length: 1411
- database: ena
- NCBI tax ID: 663580
GC content
| @ref | GC-content | method |
|---|---|---|
| 18231 | 73.6 | |
| 67770 | 73.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 18231
culture collection no.: DSM 26466, JCM 17595, KCTC 19695
literature
- topic: Phylogeny
- Pubmed-ID: 22538666
- title: Phycicoccus ochangensis sp. nov., isolated from soil of a potato cultivation field.
- authors: Kim H, Oh HW, Park DS, Lee KH, Kim SU, Park HM, Bae KS
- journal: J Microbiol
- DOI: 10.1007/s12275-012-1206-6
- year: 2012
- mesh: Actinomycetales/classification/genetics/*isolation & purification/metabolism, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, Sodium Chloride/metabolism, *Soil Microbiology, Solanum tuberosum/growth & development/microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18231 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26466) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26466 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |