Strain identifier

BacDive ID: 6262

Type strain: No

Species: Janibacter sanguinis

Strain Designation: 03-238

Strain history: CIP <- 2003, J. Loubinoux, Hôtel Dieu Hosp., Paris, France: strain 03-238

NCBI tax ID(s): 256549 (species)

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General

@ref: 6207

BacDive-ID: 6262

DSM-Number: 15959

keywords: 16S sequence, obligate aerobe, mesophilic, Gram-positive, ovoid-shaped

description: Janibacter sanguinis 03-238 is an obligate aerobe, mesophilic, Gram-positive Actinobacterium that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 256549
  • Matching level: species

strain history

@refhistory
6207<- J. Loubinoux
122425CIP <- 2003, J. Loubinoux, Hôtel Dieu Hosp., Paris, France: strain 03-238

doi: 10.13145/bacdive6262.20230509.8.1

Name and taxonomic classification

@ref: 6207

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Janibacter

species: Janibacter sanguinis

full scientific name: Janibacter sanguinis

strain designation: 03-238

type strain: no

Morphology

cell morphology

  • @ref: 122425
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 122425

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6207TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
6207COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
34315MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
6207TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
122425CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6207positivegrowth37mesophilic
34315positivegrowth37mesophilic
122425positivegrowth25-37mesophilic
122425nogrowth10psychrophilic
122425nogrowth15psychrophilic
122425nogrowth41thermophilic
122425nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122425
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122425NaClpositivegrowth0-6 %
122425NaClnogrowth8 %
122425NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
12242516947citrate-carbon source
1224254853esculin-hydrolysis
122425606565hippurate-hydrolysis
12242517632nitrate-reduction
12242516301nitrite-reduction
12242517632nitrate-respiration

antibiotic resistance

  • @ref: 122425
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
12242535581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
12242515688acetoin-
12242517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
122425oxidase-
122425beta-galactosidase+3.2.1.23
122425alcohol dehydrogenase-1.1.1.1
122425gelatinase+/-
122425amylase-
122425DNase-
122425caseinase-3.4.21.50
122425catalase+1.11.1.6
122425tween esterase+
122425gamma-glutamyltransferase+2.3.2.2
122425lecithinase-
122425lipase-
122425lysine decarboxylase-4.1.1.18
122425ornithine decarboxylase-4.1.1.17
122425phenylalanine ammonia-lyase-4.3.1.24
122425protease+
122425tryptophan deaminase-
122425urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122425--++-+---+++---+----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUNO2N2
122425--------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122425+--+---------------------------+-----------------+----------+--------------+----+------------++-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
6207human bloodParisFranceFRAEurope
60655Human blood,51-yr-old man,acute myeloid leukemiaParisFranceFRAEurope2001-10-01
122425Human, BloodParisFranceFRAEurope2002

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_1630.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_927;97_1079;98_1288;99_1630&stattab=map
  • Last taxonomy: Janibacter indicus
  • 16S sequence: AY383745
  • Sequence Identity:
  • Total samples: 13107
  • soil counts: 4194
  • aquatic counts: 1791
  • animal counts: 5661
  • plant counts: 1461

Safety information

risk assessment

  • @ref: 122425
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6207
  • description: Janibacter sanguinis 16S ribosomal RNA gene, partial sequence
  • accession: AY383745
  • length: 1405
  • database: ena
  • NCBI tax ID: 256549

External links

@ref: 6207

culture collection no.: DSM 15959, CIP 108123, CCUG 55588

Reference

@idauthorscataloguedoi/urltitle
6207Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15959)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15959
34315Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5711
60655Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55588)https://www.ccug.se/strain?id=55588
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
122425Curators of the CIPCollection of Institut Pasteur (CIP 108123)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108123