Strain identifier
BacDive ID: 6231
Type strain: 
Species: Idiomarina fontislapidosi
Strain Designation: F23
Strain history: <- E. Quesada; F23 <- M. J. Martínez-Cánovas
NCBI tax ID(s): 263723 (species)
version 8.1 (current version)
General
@ref: 6308
BacDive-ID: 6231
DSM-Number: 16139
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Idiomarina fontislapidosi F23 is a mesophilic, Gram-negative, motile bacterium that was isolated from soil from the temporally emerged banks of a hypersaline pool.
NCBI tax id
- NCBI tax id: 263723
- Matching level: species
strain history
- @ref: 6308
- history: <- E. Quesada; F23 <- M. J. Martínez-Cánovas
doi: 10.13145/bacdive6231.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Idiomarinaceae
- genus: Idiomarina
- species: Idiomarina fontislapidosi
- full scientific name: Idiomarina fontislapidosi Martínez-Cánovas et al. 2004
@ref: 6308
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Idiomarinaceae
genus: Idiomarina
species: Idiomarina fontislapidosi
full scientific name: Idiomarina fontislapidosi Martínez-Cánovas et al. 2004
strain designation: F23
type strain: yes
Morphology
cell morphology
- @ref: 31269
- gram stain: negative
- cell length: 3.5 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6308 | IDIOMARINA MEDIUM (DSMZ Medium 1016) | yes | https://mediadive.dsmz.de/medium/1016 | Name: IDIOMARINA MEDIUM (DSMZ Medium 1016) Composition: NaCl 60.0 g/l Agar 18.0 g/l Glucose 10.0 g/l Proteose peptone 5.0 g/l Malt extract 3.0 g/l Yeast extract 3.0 g/l Distilled water |
| 40024 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6308 | positive | growth | 28-32 | mesophilic |
| 31269 | positive | growth | 04-45 | |
| 31269 | positive | optimum | 32 | mesophilic |
| 40024 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31269 | positive | growth | 05-10 | alkaliphile |
| 31269 | positive | optimum | 7.5 |
Physiology and metabolism
spore formation
- @ref: 31269
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31269 | NaCl | positive | growth | 0.5-20 % |
| 31269 | NaCl | positive | optimum | 4 % |
observation
- @ref: 31269
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31269 | 53424 | tween 20 | + | carbon source |
| 31269 | 53426 | tween 80 | + | carbon source |
| 31269 | 4853 | esculin | + | hydrolysis |
metabolite production
- @ref: 31269
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
- @ref: 31269
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 6308
- sample type: soil from the temporally emerged banks of a hypersaline pool
- geographic location: Malaga, Fuente de Piedra
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_3398.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_1775;97_2125;98_2605;99_3398&stattab=map
- Last taxonomy: Idiomarina
- 16S sequence: AY526861
- Sequence Identity:
- Total samples: 1595
- soil counts: 48
- aquatic counts: 1160
- animal counts: 360
- plant counts: 27
Safety information
risk assessment
- @ref: 6308
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31269
- description: Idiomarina fontislapidosi 16S ribosomal RNA gene, partial sequence
- accession: AY526861
- length: 1455
- database: nuccore
- NCBI tax ID: 263723
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Idiomarina fontislapidosi F23 | GCA_003987025 | contig | ncbi | 263723 |
| 66792 | Idiomarina fontislapidosi F23 | 2843563119 | draft | img | 263723 |
GC content
- @ref: 6308
- GC-content: 46
External links
@ref: 6308
culture collection no.: DSM 16139
straininfo link
- @ref: 75710
- straininfo: 128266
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 6308 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16139) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16139 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 31269 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27589 | 28776041 | |
| 40024 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6210 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75710 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID128266.1 | StrainInfo: A central database for resolving microbial strain identifiers |