Strain identifier

BacDive ID: 6226

Type strain: Yes

Species: Idiomarina baltica

Strain Designation: OS145

Strain history: CIP <- 2003, I. Brettar, GBF, Braunschweig, Germany: strain OS145

NCBI tax ID(s): 190892 (species)

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General

@ref: 5729

BacDive-ID: 6226

DSM-Number: 15154

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Idiomarina baltica OS145 is a mesophilic, Gram-negative, motile bacterium that was isolated from water sample, 30m depth.

NCBI tax id

  • NCBI tax id: 190892
  • Matching level: species

strain history

@refhistory
5729<- I. Brettar, GBF; OS145
399502003, I. Brettar, GBF, Braunschweig, Germany: strain OS145
116721CIP <- 2003, I. Brettar, GBF, Braunschweig, Germany: strain OS145

doi: 10.13145/bacdive6226.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Idiomarinaceae
  • genus: Idiomarina
  • species: Idiomarina baltica
  • full scientific name: Idiomarina baltica Brettar et al. 2003

@ref: 5729

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Idiomarinaceae

genus: Idiomarina

species: Idiomarina baltica

full scientific name: Idiomarina baltica Brettar et al. 2003

strain designation: OS145

type strain: yes

Morphology

cell morphology

  • @ref: 116721
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5729BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39950Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116721CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5729positivegrowth28mesophilic
39950positivegrowth30mesophilic
116721positivegrowth15-41
116721nogrowth5psychrophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
116721NaClpositivegrowth2-10 %
116721NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1167214853esculin+hydrolysis
11672117234glucose-fermentation
11672117716lactose-fermentation
11672117632nitrate+reduction
11672116301nitrite-reduction
116721132112sodium thiosulfate-builds gas from

metabolite production

  • @ref: 116721
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11672115688acetoin-
11672117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116721oxidase+
116721beta-galactosidase-3.2.1.23
116721alcohol dehydrogenase-1.1.1.1
116721gelatinase+
116721amylase-
116721caseinase+3.4.21.50
116721catalase+1.11.1.6
116721tween esterase+
116721gamma-glutamyltransferase+2.3.2.2
116721lecithinase+
116721lipase-
116721lysine decarboxylase-4.1.1.18
116721ornithine decarboxylase-4.1.1.17
116721phenylalanine ammonia-lyase-4.3.1.24
116721protease+
116721tryptophan deaminase-
116721urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116721-+++++++-+++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryisolation date
5729water sample, 30m depthcentral Baltic Sea
116721Environment, Water samplesBaltic Sea1986

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_13497.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_1775;97_2125;98_2605;99_13497&stattab=map
  • Last taxonomy: Idiomarina baltica
  • 16S sequence: AJ440214
  • Sequence Identity:
  • Total samples: 716
  • soil counts: 4
  • aquatic counts: 648
  • animal counts: 62
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
57291Risk group (German classification)
1167211Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Idiomarina baltica partial 16S rRNA gene, strain OS145
  • accession: AJ440214
  • length: 1476
  • database: ena
  • NCBI tax ID: 314276

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Idiomarina baltica OS145GCA_000152885scaffoldncbi314276
66792Idiomarina baltica OS145314276.4wgspatric314276
66792Idiomarina baltica OS145638341106draftimg314276

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.439no
flagellatedno51.946no
gram-positiveno98.907no
anaerobicno96.567no
aerobicyes88.049no
halophileyes52.496no
spore-formingno97.331no
thermophileno99.046yes
glucose-utilyes86.244no
glucose-fermentno81.065no

External links

@ref: 5729

culture collection no.: DSM 15154, LMG 21691, CIP 107824

straininfo link

  • @ref: 75705
  • straininfo: 88973

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12710605Idiomarina baltica sp. nov., a marine bacterium with a high optimum growth temperature isolated from surface water of the central Baltic Sea.Brettar I, Christen R, Hofle MGInt J Syst Evol Microbiol10.1099/ijs.0.02399-02003Baltic States, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/metabolism, Microscopy, Phase-Contrast, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Seawater/*microbiology, TemperatureGenetics
Metabolism18355891Ca-Mg kutnahorite and struvite production by Idiomarina strains at modern seawater salinities.Gonzalez-Munoz MT, De Linares C, Martinez-Ruiz F, Morcillo F, Martin-Ramos D, Arias JMChemosphere10.1016/j.chemosphere.2008.02.0102008Alteromonadaceae/classification/*metabolism/ultrastructure, Ammonia/metabolism, Carbon Dioxide/metabolism, Magnesium Compounds/chemistry/*metabolism, Microscopy, Electron, Scanning, Microscopy, Electron, Transmission, Phosphates/chemistry/*metabolism, Phylogeny, Protons, RNA, Ribosomal, 16S/genetics, Salinity, Seawater/chemistry/*microbiology, StruvitePhylogeny
Phylogeny26382219Idiomarina aquatica sp. nov., a moderately halophilic bacterium isolated from salterns.Jose Leon M, Martinez-Checa F, Ventosa A, Sanchez-Porro CInt J Syst Evol Microbiol10.1099/ijsem.0.0006192015Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Spain, Ubiquinone/chemistry, *Water MicrobiologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5729Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15154)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15154
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39950Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5378
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75705Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88973.1StrainInfo: A central database for resolving microbial strain identifiers
116721Curators of the CIPCollection of Institut Pasteur (CIP 107824)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107824