Strain identifier

BacDive ID: 6212

Type strain: Yes

Species: Maricaulis virginensis

Strain Designation: VC-5

Strain history: CIP <- 2002, W.R. Abraham, CBF, Braunscheig, Germany: strain VC-5

NCBI tax ID(s): 144022 (species)

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General

@ref: 6278

BacDive-ID: 6212

DSM-Number: 16079

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Maricaulis virginensis VC-5 is a mesophilic, Gram-negative, motile bacterium that was isolated from deep sea water near a hydrothermal vent.

NCBI tax id

  • NCBI tax id: 144022
  • Matching level: species

strain history

@refhistory
6278<- W.-R. Abraham, GBF <- VKM <- L. V. Andreev <- J. S. Poindexter; VC-5
123856CIP <- 2002, W.R. Abraham, CBF, Braunscheig, Germany: strain VC-5

doi: 10.13145/bacdive6212.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Maricaulaceae
  • genus: Maricaulis
  • species: Maricaulis virginensis
  • full scientific name: Maricaulis virginensis Abraham et al. 2002

@ref: 6278

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Caulobacterales

family: Maricaulaceae

genus: Maricaulis

species: Maricaulis virginensis

full scientific name: Maricaulis virginensis Abraham et al. 2002

strain designation: VC-5

type strain: yes

Morphology

cell morphology

  • @ref: 123856
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6278MARICAULIS MEDIUM (DSMZ Medium 1025)yeshttps://mediadive.dsmz.de/medium/1025Name: MARICAULIS MEDIUM (DSMZ Medium 1025) Composition: Sigma Sea salts 30.0 g/l Peptone 2.0 g/l Yeast extract 1.0 g/l Glucose 1.0 g/l NH4Cl 0.5 g/l Riboflavin Distilled water
33796Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
123856CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6278positivegrowth30mesophilic
33796positivegrowth25mesophilic
123856positivegrowth25-41
123856nogrowth10psychrophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
123856NaClpositivegrowth6-10 %
123856NaClnogrowth0 %
123856NaClnogrowth2 %
123856NaClnogrowth4 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
123856citrate-carbon source16947
123856esculin-hydrolysis4853
123856nitrate+reduction17632
123856nitrite-reduction16301

metabolite production

  • @ref: 123856
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
123856oxidase+
123856beta-galactosidase-3.2.1.23
123856alcohol dehydrogenase-1.1.1.1
123856gelatinase-
123856caseinase-3.4.21.50
123856catalase-1.11.1.6
123856tween esterase+
123856lecithinase-
123856lipase-
123856lysine decarboxylase-4.1.1.18
123856ornithine decarboxylase-4.1.1.17
123856protease+
123856tryptophan deaminase-
123856urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123856-+++-+++++++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123856-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6278deep sea water near a hydrothermal vent
123856Environment, Deep sea waterVirgin IslandsUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Aquatic#Marine
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_13493.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_331;96_1363;97_1618;98_10191;99_13493&stattab=map
  • Last taxonomy: Maricaulis
  • 16S sequence: AJ301667
  • Sequence Identity:
  • Total samples: 1359
  • soil counts: 4
  • aquatic counts: 1345
  • animal counts: 9
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
62781Risk group (German classification)
1238561Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6278
  • description: Maricaulis virginensis 16S rRNA gene, strain VC5
  • accession: AJ301667
  • length: 1420
  • database: ena
  • NCBI tax ID: 144022

GC content

  • @ref: 6278
  • GC-content: 65.2

External links

@ref: 6278

culture collection no.: DSM 16079, CIP 107438, LMG 21018, VKM B-1513, KCTC 12217

straininfo link

  • @ref: 75691
  • straininfo: 71837

Reference

@idauthorscataloguedoi/urltitle
6278Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16079)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16079
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33796Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4874
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75691Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID71837.1StrainInfo: A central database for resolving microbial strain identifiers
123856Curators of the CIPCollection of Institut Pasteur (CIP 107438)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107438