Strain identifier

BacDive ID: 6211

Type strain: Yes

Species: Maricaulis parjimensis

Strain history: CIP <- 2002, W.R. Abraham, GBF, Braunshweig, Germany: strain MCS 25 <- J. Smit

NCBI tax ID(s): 144023 (species)

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General

@ref: 6262

BacDive-ID: 6211

DSM-Number: 16078

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Maricaulis parjimensis DSM 16078 is a mesophilic, Gram-negative bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 144023
  • Matching level: species

strain history

@refhistory
6262<- W.-R. Abraham, GBF <- J. Smit; MCS 25
121599CIP <- 2002, W.R. Abraham, GBF, Braunshweig, Germany: strain MCS 25 <- J. Smit

doi: 10.13145/bacdive6211.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Maricaulaceae
  • genus: Maricaulis
  • species: Maricaulis parjimensis
  • full scientific name: Maricaulis parjimensis Abraham et al. 2002

@ref: 6262

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Caulobacterales

family: Hyphomonadaceae

genus: Maricaulis

species: Maricaulis parjimensis

full scientific name: Maricaulis parjimensis Abraham et al. 2002

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative100
121599negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33798Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121599CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
33798positivegrowth25mesophilic
121599positivegrowth25-41
121599nogrowth10psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
121599NaClnogrowth0 %
121599NaClnogrowth2 %
121599NaClnogrowth4 %
121599NaClnogrowth6 %
121599NaClnogrowth8 %
121599NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12159916947citrate-carbon source
1215994853esculin-hydrolysis
12159917632nitrate-reduction
12159916301nitrite-reduction

metabolite production

  • @ref: 121599
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121599oxidase+
121599beta-galactosidase-3.2.1.23
121599alcohol dehydrogenase-1.1.1.1
121599gelatinase+/-
121599amylase-
121599caseinase-3.4.21.50
121599catalase+1.11.1.6
121599tween esterase+
121599lecithinase-
121599lipase-
121599lysine decarboxylase-4.1.1.18
121599ornithine decarboxylase-4.1.1.17
121599protease+
121599tryptophan deaminase-
121599urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121599-+++-+++++++---++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6262sea watercoast of GoaIndiaINDAsia
121599Environment, Sea waterIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_13493.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_331;96_1363;97_1618;98_10191;99_13493&stattab=map
  • Last taxonomy: Maricaulis
  • 16S sequence: AJ227808
  • Sequence Identity:
  • Total samples: 1359
  • soil counts: 4
  • aquatic counts: 1345
  • animal counts: 9
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
62621Risk group (German classification)
1215991Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Maricaulis sp. DNA for 16S ribosomal RNA, strain MCS25
  • accession: AJ227808
  • length: 1420
  • database: ena
  • NCBI tax ID: 144023

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maricaulis parjimensis DSM 16078GCA_016817355scaffoldncbi144023
66792Maricaulis parjimensis strain DSM 16078144023.3wgspatric144023

GC content

  • @ref: 6262
  • GC-content: 63.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes52.541no
gram-positiveno99.265no
anaerobicno98.229no
aerobicyes90.295no
halophileno69.991no
spore-formingno97.276no
thermophileno94.454yes
glucose-utilyes88no
motileyes92.115no
glucose-fermentno91.849no

External links

@ref: 6262

culture collection no.: DSM 16078, CIP 107440, LMG 19863, MCS 25, KCTC 12215

straininfo link

  • @ref: 75690
  • straininfo: 86093

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12508888Phylogeny of Maricaulis Abraham et al. 1999 and proposal of Maricaulis virginensis sp. nov., M. parjimensis sp. nov., M. washingtonensis sp. nov. and M. salignorans sp. nov.Abraham WR, Strompl C, Bennasar A, Vancanneyt M, Snauwaert C, Swings J, Smit J, Moore ERBInt J Syst Evol Microbiol10.1099/00207713-52-6-21912002Alphaproteobacteria/*classification/genetics/isolation & purification/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as TopicGenetics
Phylogeny23377489Euryhalocaulis caribicus gen. nov., sp. nov., a new member [corrected] of the family Hyphomonadaceae isolated from the Caribbean Sea.Deng W, Zhang Y, Xie X, Zhao Z, Fu YCurr Microbiol10.1007/s00284-013-0314-92013Alphaproteobacteria/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Base Sequence, Caribbean Region, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6262Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16078)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16078
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33798Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4876
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75690Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID86093.1StrainInfo: A central database for resolving microbial strain identifiers
121599Curators of the CIPCollection of Institut Pasteur (CIP 107440)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107440