Strain identifier

BacDive ID: 6208

Type strain: Yes

Species: Maricaulis maris

Strain Designation: CM 11

Strain history: CIP <- 1999, W.R. Abraham, GBF, Braunschweig, Germany <- ATCC <- J. Poindexter: strain CM 11

NCBI tax ID(s): 74318 (species)

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General

@ref: 1740

BacDive-ID: 6208

DSM-Number: 4734

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Maricaulis maris CM 11 is a mesophilic, Gram-negative bacterium that was isolated from filtered sea water.

NCBI tax id

  • NCBI tax id: 74318
  • Matching level: species

strain history

@refhistory
1740<- ATCC <- J.S. Poindexter, CM 11
67770IAM 14255 <-- NCIMB 2209 <-- ATCC 15268 <-- J. S. Poindexter CM 11.
120825CIP <- 1999, W.R. Abraham, GBF, Braunschweig, Germany <- ATCC <- J. Poindexter: strain CM 11

doi: 10.13145/bacdive6208.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Maricaulaceae
  • genus: Maricaulis
  • species: Maricaulis maris
  • full scientific name: Maricaulis maris (Poindexter 1964) Abraham et al. 1999

  • synonyms

    @refsynonym
    20215Caulobacter maris
    20215Caulobacter halobacteroides

@ref: 1740

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Caulobacterales

family: Maricaulaceae

genus: Maricaulis

species: Maricaulis maris

full scientific name: Maricaulis maris (Poindexter 1964) Abraham et al. 1999

strain designation: CM 11

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.994
120825negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1740BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
1740MARINE CAULOBACTER MEDIUM (DSMZ Medium 601)yeshttps://mediadive.dsmz.de/medium/601Name: MARINE CAULOBACTER MEDIUM (DSMZ Medium 601) Composition: Proteose peptone 10.0 g/l Yeast extract 3.0 g/l Sea water
39472MEDIUM 323 - for Maricaulis marisyesAgar (15.000 g);Yeast extract (3.000 g);Proteose Peptone N°3 (10.000 g)
120825CIP Medium 323yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=323

culture temp

@refgrowthtypetemperaturerange
1740positivegrowth28mesophilic
39472positivegrowth25mesophilic
67770positivegrowth25mesophilic
120825positivegrowth25-37mesophilic
120825nogrowth10psychrophilic
120825nogrowth41thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.993

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1208254853esculin-hydrolysis
12082517632nitrate+reduction
12082516301nitrite-reduction

metabolite production

  • @ref: 120825
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
120825oxidase+
120825beta-galactosidase-3.2.1.23
120825alcohol dehydrogenase-1.1.1.1
120825gelatinase+/-
120825amylase-
120825caseinase-3.4.21.50
120825catalase-1.11.1.6
120825tween esterase+
120825lecithinase-
120825lipase-
120825lysine decarboxylase-4.1.1.18
120825ornithine decarboxylase-4.1.1.17
120825protease-
120825tryptophan deaminase-
120825urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120825-+-+-+-+++----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1740filtered sea water
67770Filtered seawater
120825Environment, Filtered sea waterUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_2531.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_331;96_1363;97_1618;98_1968;99_2531&stattab=map
  • Last taxonomy: Maricaulis maris subclade
  • 16S sequence: AJ227802
  • Sequence Identity:
  • Total samples: 6456
  • soil counts: 182
  • aquatic counts: 6082
  • animal counts: 149
  • plant counts: 43

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
17401Risk group (German classification)
1208251Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Caulobacter maris 16S rRNA geneAJ0078071387ena74318
20218Maricaulis maris DNA for 16S ribosomal RNA, strain ATCC 15268 (T)AJ2278021422ena74318
20218Maricaulis maris gene for 16S rRNA, partial sequence, strain: NBRC 102484AB6818231392ena74318
20218Maricaulis maris gene for 16S rRNA, partial sequenceAB0088501315ena74318

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maricaulis maris strain DSM 473474318.5wgspatric74318
66792Maricaulis maris DSM 47342757320355draftimg74318
67770Maricaulis maris DSM 4734GCA_003634045scaffoldncbi74318

GC content

  • @ref: 67770
  • GC-content: 62.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.562no
flagellatedno52.348no
gram-positiveno98.939no
anaerobicno99.203no
aerobicyes90.733no
halophileno68.423no
spore-formingno96.971no
glucose-utilyes85.628no
thermophileno94.02no
glucose-fermentno90.889no

External links

@ref: 1740

culture collection no.: DSM 4734, ATCC 15268, JCM 21108, CIP 106103, IAM 14255, NBRC 102484, NCIMB 2209, VKM B-1510

straininfo link

  • @ref: 75687
  • straininfo: 45581

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1740Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4734)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4734
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39472Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18195
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75687Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45581.1StrainInfo: A central database for resolving microbial strain identifiers
120825Curators of the CIPCollection of Institut Pasteur (CIP 106103)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106103