Strain identifier
BacDive ID: 6188
Type strain:
Species: Rhodoplanes roseus
Strain Designation: 2
Strain history: <- T. Horath; strain 2
NCBI tax ID(s): 29409 (species)
version 8.1 (current version)
General
@ref: 4973
BacDive-ID: 6188
DSM-Number: 13233
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Rhodoplanes roseus 2 is an anaerobe, mesophilic bacterium that was isolated from highland, wet land.
NCBI tax id
- NCBI tax id: 29409
- Matching level: species
strain history
- @ref: 4973
- history: <- T. Horath; strain 2
doi: 10.13145/bacdive6188.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Rhodoplanes
- species: Rhodoplanes roseus
- full scientific name: Rhodoplanes roseus (Janssen and Harfoot 1991) Hiraishi and Ueda 1994
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas rosea
@ref: 4973
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Rhodoplanes
species: Rhodoplanes roseus
full scientific name: Rhodoplanes roseus (Janssen and Harfoot 1991) Hiraishi and Ueda 1994
strain designation: 2
type strain: no
Culture and growth conditions
culture medium
- @ref: 4973
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27; with strain-specific modifications) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NH4Cl 0.4 g/l NaCl 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.1 g/l CaCl2 x 2 H2O 0.05 g/l Resazurin 0.005 g/l Fe(III) citrate 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 4973
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4973
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4973
- sample type: highland, wet land
- geographic location: Lago di Cadagno. Canton of Ticino
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Wetland (Swamp)
Safety information
risk assessment
- @ref: 4973
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhodoplanes roseus partial 16S rRNA gene, strain DSM 13 233
- accession: AJ289105
- length: 1413
- database: ena
- NCBI tax ID: 29409
External links
@ref: 4973
culture collection no.: DSM 13233
straininfo link
- @ref: 75669
- straininfo: 49442
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4973 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13233) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13233 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
75669 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49442.1 | StrainInfo: A central database for resolving microbial strain identifiers |