Strain identifier
BacDive ID: 6160
Type strain: 
Species: Blastochloris viridis
Strain Designation: Drews F, F
Strain history: <- G. Drews, F
NCBI tax ID(s): 1079 (species)
version 9.1 (current version)
General
@ref: 2113
BacDive-ID: 6160
DSM-Number: 133
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, motile
description: Blastochloris viridis Drews F is an anaerobe, motile bacterium that was isolated from water.
NCBI tax id
- NCBI tax id: 1079
- Matching level: species
strain history
- @ref: 2113
- history: <- G. Drews, F
doi: 10.13145/bacdive6160.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Blastochloridaceae
- genus: Blastochloris
- species: Blastochloris viridis
- full scientific name: Blastochloris viridis (Drews and Giesbrecht 1966) Hiraishi 1997
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas viridis
@ref: 2113
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Blastochloridaceae
genus: Blastochloris
species: Blastochloris viridis
full scientific name: Blastochloris viridis (Drews and Giesbrecht 1966) Hiraishi 1997
strain designation: Drews F, F
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.828
Culture and growth conditions
culture medium
- @ref: 2113
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 2113
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 2113
- oxygen tolerance: anaerobe
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 2113
- sample type: water
- geographic location: Freiburg, Dreisam river
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_6972.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_3273;97_4014;98_5120;99_6972&stattab=map
- Last taxonomy: Blastochloris viridis
- 16S sequence: AF084495
- Sequence Identity:
- Total samples: 4340
- soil counts: 2103
- aquatic counts: 1444
- animal counts: 554
- plant counts: 239
Safety information
risk assessment
- @ref: 2113
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Blastochloris viridis gene for 16S rRNA | D25314 | 1410 | nuccore | 1079 |
| 20218 | Blastochloris viridis strain DSM 133 16S ribosomal RNA gene, partial sequence | AF084495 | 1467 | nuccore | 1079 |
| 20218 | Blastochloris viridis strain DSM 133 substrain 94 16S ribosomal RNA gene, partial sequence | HQ009851 | 1479 | nuccore | 1079 |
| 20218 | Blastochloris viridis strain DSM 133 substrain 08 16S ribosomal RNA gene, partial sequence | HQ009852 | 1479 | nuccore | 1079 |
| 20218 | Blastochloris viridis 16S rRNA | D14430 | 1377 | nuccore | 1079 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastochloris viridis ATCC 19567 | GCA_001402875 | complete | ncbi | 1079 |
| 66792 | Blastochloris viridis DSM 133 | GCA_001548155 | complete | ncbi | 1079 |
| 66792 | Blastochloris viridis strain 1 | 1079.14 | complete | patric | 1079 |
| 66792 | Blastochloris viridis strain ATCC 19567 | 1079.13 | complete | patric | 1079 |
| 66792 | Blastochloris viridis strain DSM 133 | 1079.15 | complete | patric | 1079 |
| 66792 | Blastochloris viridis DSM 133 | 2811994989 | complete | img | 1079 |
| 66792 | Blastochloris viridis ATCC 19567 | 2671180457 | complete | img | 1079 |
| 66792 | Blastochloris viridis Drews F, DSM 133 | 2516653000 | draft | img | 1079 |
| 66792 | Blastochloris viridis DSM 133 | 2687453285 | complete | img | 1079 |
GC content
- @ref: 2113
- GC-content: 68.4
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.828 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 52.207 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 68.597 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.307 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.434 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 74.483 | no |
External links
@ref: 2113
culture collection no.: DSM 133, ATCC 19567
straininfo link
- @ref: 75646
- straininfo: 4912
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 6305906 | Nitrogen fixation and ammonia switch-off in the photosynthetic bacterium Rhodopseudomonas viridis. | Howard KS, Hales BJ, Socolofsky MD | J Bacteriol | 10.1128/jb.155.1.107-112.1983 | 1983 | Acetylene/metabolism, Ammonia/*metabolism, Anaerobiosis, Electron Spin Resonance Spectroscopy, Kinetics, *Nitrogen Fixation, Nitrogenase/metabolism, Photosynthesis, Rhodopseudomonas/growth & development/*metabolism | Enzymology |
| Phylogeny | 12586417 | Evidence for limited species diversity of bacteriochlorophyll b-containing purple nonsulfur anoxygenic phototrophs in freshwater habitats. | Hoogewerf GJ, Jung DO, Madigan MT | FEMS Microbiol Lett | 10.1016/S0378-1097(02)01195-3 | 2003 | Alphaproteobacteria/chemistry/*classification/metabolism, Anaerobiosis, Bacteria/*classification/genetics/isolation & purification, Bacteriochlorophylls/*analysis, Base Sequence, Carbon/metabolism, Color, DNA, Bacterial/genetics, Ecosystem, Fresh Water/*microbiology, Phylogeny, RNA, Ribosomal, 16S, Sequence Alignment, Sulfur/metabolism | Metabolism |
| Phylogeny | 20817841 | Blastochloris gulmargensis sp. nov., isolated from an epilithic phototrophic biofilm. | Venkata Ramana V, Kapoor S, Shobha E, Ramprasad EVV, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.025965-0 | 2010 | Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, *Biofilms, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/microbiology, Molecular Sequence Data, Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Genetics |
| Genetics | 22054235 | New insights into the structure of the reaction centre from Blastochloris viridis: evolution in the laboratory. | Roszak AW, Moulisova V, Reksodipuro AD, Gardiner AT, Fujii R, Hashimoto H, Isaacs NW, Cogdell RJ | Biochem J | 10.1042/BJ20111540 | 2012 | Alphaproteobacteria/genetics, Amino Acid Sequence, Base Sequence, Biological Evolution, Carotenoids/chemistry, Crystallography, X-Ray, Genetic Drift, Molecular Conformation, Molecular Sequence Data, Photosynthetic Reaction Center Complex Proteins/chemistry/*genetics, Point Mutation | |
| Genetics | 26798090 | Revised Genome Sequence of the Purple Photosynthetic Bacterium Blastochloris viridis. | Liu LN, Faulkner M, Liu X, Huang F, Darby AC, Hall N | Genome Announc | 10.1128/genomeA.01520-15 | 2016 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2113 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 133) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-133 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 75646 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4912.1 | StrainInfo: A central database for resolving microbial strain identifiers |