Strain identifier
BacDive ID: 6158
Type strain: 
Species: Blastochloris sulfoviridis
Strain Designation: P1
Strain history: <- V.M. Gorlenko, P1
NCBI tax ID(s): 50712 (species)
version 8.1 (current version)
General
@ref: 374
BacDive-ID: 6158
DSM-Number: 729
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Blastochloris sulfoviridis P1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sulfur spring.
NCBI tax id
- NCBI tax id: 50712
- Matching level: species
strain history
- @ref: 374
- history: <- V.M. Gorlenko, P1
doi: 10.13145/bacdive6158.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Blastochloridaceae
- genus: Blastochloris
- species: Blastochloris sulfoviridis
- full scientific name: Blastochloris sulfoviridis (Keppen and Gorlenko 1975) Hiraishi 1997
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas sulfoviridis
@ref: 374
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Blastochloridaceae
genus: Blastochloris
species: Blastochloris sulfoviridis
full scientific name: Blastochloris sulfoviridis (Keppen and Gorlenko 1975) Hiraishi 1997
strain designation: P1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 374
- name: RHODOPSEUDOMONAS SULFOVIRIDIS MEDIUM (DSMZ Medium 109)
- growth: yes
- link: https://mediadive.dsmz.de/medium/109
- composition: Name: RHODOPSEUDOMONAS SULFOVIRIDIS MEDIUM (DSMZ Medium 109) Composition: Disodium succinate 1.0 g/l Sodium malate 1.0 g/l Sodium Thiosulfate 0.5 g/l Ammonium acetate 0.5 g/l KH2PO4 0.5 g/l NH4Cl 0.4 g/l NaCl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 374
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 374
- oxygen tolerance: anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
Isolation, sampling and environmental information
isolation
- @ref: 374
- sample type: sulfur spring
- country: USSR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_66423.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_3273;97_4014;98_5120;99_66423&stattab=map
- Last taxonomy: Blastochloris
- 16S sequence: D86514
- Sequence Identity:
- Total samples: 613
- soil counts: 234
- aquatic counts: 230
- animal counts: 129
- plant counts: 20
Safety information
risk assessment
- @ref: 374
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 374
- description: Blastochloris sulfoviridis DNA for 16S rRNA
- accession: D86514
- length: 1408
- database: ena
- NCBI tax ID: 50712
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastochloris sulfoviridis DSM 729 | GCA_008630065 | contig | ncbi | 50712 |
| 66792 | Blastochloris sulfoviridis strain DSM 729 | 50712.4 | wgs | patric | 50712 |
GC content
- @ref: 374
- GC-content: 68.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 99.031 | no |
| anaerobic | yes | 96.361 | yes |
| halophile | no | 95.695 | no |
| spore-forming | no | 92.458 | no |
| glucose-util | no | 54.721 | no |
| aerobic | no | 95.68 | yes |
| thermophile | no | 83.157 | no |
| flagellated | yes | 57.301 | no |
| motile | yes | 86.024 | no |
| glucose-ferment | no | 86.133 | no |
External links
@ref: 374
culture collection no.: DSM 729
straininfo link
- @ref: 75644
- straininfo: 47265
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| 10525736 | Phototrophic utilization of toluene under anoxic conditions by a new strain of blastochloris sulfoviridis | Zengler K, Heider J, Rossello-Mora R, Widdel F | Arch Microbiol | 10.1007/s002030050761 | 1999 | |||
| 20817841 | Blastochloris gulmargensis sp. nov., isolated from an epilithic phototrophic biofilm. | Venkata Ramana V, Kapoor S, Shobha E, Ramprasad EVV, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.025965-0 | 2010 | Phylogeny | Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, *Biofilms, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/microbiology, Molecular Sequence Data, Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Genetics |
| 32354981 | Genome Sequence of the Alphaproteobacterium Blastochloris sulfoviridis DSM 729, Which Requires Reduced Sulfur as a Growth Supplement and Contains Bacteriochlorophyll b. | Kyndt JA, Montano Salama D, Meyer TE | Microbiol Resour Announc | 10.1128/MRA.00313-20 | 2020 | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 374 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 729) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-729 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 75644 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47265.1 | StrainInfo: A central database for resolving microbial strain identifiers |