Strain identifier
BacDive ID: 6154
Type strain: 
Species: Ancalomicrobium adetum
Strain Designation: 4a:2
Strain history: IAM 14882 <-- DSM 4722 <-- ATCC 23632 <-- J. T. Staley 4a:2.
NCBI tax ID(s): 213680 (species)
version 8.1 (current version)
General
@ref: 1728
BacDive-ID: 6154
DSM-Number: 4722
keywords: 16S sequence, Bacteria, mesophilic
description: Ancalomicrobium adetum 4a:2 is a mesophilic bacterium that was isolated from freshwater creek.
NCBI tax id
- NCBI tax id: 213680
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1728 | <- ATCC <- J.T. Staley, 4a:2 |
| 67770 | IAM 14882 <-- DSM 4722 <-- ATCC 23632 <-- J. T. Staley 4a:2. |
doi: 10.13145/bacdive6154.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Ancalomicrobiaceae
- genus: Ancalomicrobium
- species: Ancalomicrobium adetum
- full scientific name: Ancalomicrobium adetum Staley 1968 (Approved Lists 1980)
@ref: 1728
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Ancalomicrobiaceae
genus: Ancalomicrobium
species: Ancalomicrobium adetum
full scientific name: Ancalomicrobium adetum Staley 1968
strain designation: 4a:2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1728
- name: ANCALOMICROBIUM MEDIUM (DSMZ Medium 603)
- growth: yes
- link: https://mediadive.dsmz.de/medium/603
- composition: Name: ANCALOMICROBIUM MEDIUM (DSMZ Medium 603) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.588119 g/l (NH4)2SO4 0.247525 g/l Glucose 0.247525 g/l Nitrilotriacetic acid 0.19802 g/l Na2HPO4 0.070297 g/l CaCl2 x 2 H2O 0.0660396 g/l ZnSO4 x 7 H2O 0.00108416 g/l FeSO4 x 7 H2O 0.00049505 g/l Na-EDTA 0.000247525 g/l (NH4)6Mo7O24 x 4 H2O 0.000183168 g/l MnSO4 x H2O 0.000152475 g/l Calcium pantothenate 4.95049e-05 g/l Nicotinamide 4.95049e-05 g/l Riboflavin 4.95049e-05 g/l Thiamine-HCl x 2 H2O 4.95049e-05 g/l CuSO4 x 5 H2O 3.88119e-05 g/l Co(NO3)2 x 6 H2O 2.45545e-05 g/l Biotin 1.9802e-05 g/l Folic acid 1.9802e-05 g/l Na2B4O7 x 10 H2O 1.75248e-05 g/l Vitamin B12 9.90099e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1728 | positive | growth | 26 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1728 | freshwater creek | ||||
| 67770 | Freshwater | CA | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #River (Creek) |
Safety information
risk assessment
- @ref: 1728
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Ancalomicrobium adetum gene for 16S rRNA, partial sequence, strain: NBRC 102456
- accession: AB681798
- length: 1406
- database: ena
- NCBI tax ID: 213680
External links
@ref: 1728
culture collection no.: DSM 4722, ATCC 23632, JCM 21375, IAM 14882, NBRC 102456, NCIMB 12776, VKM B-1375
straininfo link
- @ref: 75640
- straininfo: 38137
literature
- topic: Phylogeny
- Pubmed-ID: 29683414
- title: Pinisolibacter ravus gen. nov., sp. nov., isolated from pine forest soil and allocation of the genera Ancalomicrobium and Pinisolibacter to the family Ancalomicrobiaceae fam. nov., and emendation of the genus Ancalomicrobium Staley 1968.
- authors: Dahal RH, Chaudhary DK, Kim J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002772
- year: 2018
- mesh: Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Phospholipids/chemistry, *Phylogeny, *Pinus, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1728 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4722) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4722 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 75640 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38137.1 | StrainInfo: A central database for resolving microbial strain identifiers |