Strain identifier

BacDive ID: 6147

Type strain: No

Species: Thiobacillus thioparus

Strain Designation: E6

Strain history: <- D.P. Kelly, E6

NCBI tax ID(s): 931 (species)

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General

@ref: 2008

BacDive-ID: 6147

DSM-Number: 5369

keywords: 16S sequence, Bacteria, mesophilic

description: Thiobacillus thioparus E6 is a mesophilic bacterium that was isolated from pond water.

NCBI tax id

  • NCBI tax id: 931
  • Matching level: species

strain history

  • @ref: 2008
  • history: <- D.P. Kelly, E6

doi: 10.13145/bacdive6147.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Nitrosomonadales
  • family: Thiobacillaceae
  • genus: Thiobacillus
  • species: Thiobacillus thioparus
  • full scientific name: Thiobacillus thioparus Beijerinck 1904 (Approved Lists 1980)

@ref: 2008

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Hydrogenophilales

family: Thiobacillaceae

genus: Thiobacillus

species: Thiobacillus thioparus

full scientific name: Thiobacillus thioparus Beijerinck 1904

strain designation: E6

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2008
  • name: THIOBACILLUS THIOPARUS (TK-M) MEDIUM (DSMZ Medium 486)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/486
  • composition: Name: THIOBACILLUS THIOPARUS (TK-m) MEDIUM (DSMZ Medium 486) Composition: Agar 15.0 g/l Na2S2O3 x 5 H2O 5.0 g/l K2HPO4 2.0 g/l KH2PO4 2.0 g/l Na2CO3 0.4 g/l NH4Cl 0.4 g/l MgCl2 x 6 H2O 0.2 g/l Na2-EDTA 0.05 g/l ZnSO4 x 7 H2O 0.011 g/l NaOH 0.011 g/l CaCl2 x 2 H2O 0.00734 g/l FeSO4 x 7 H2O 0.005 g/l MnCl2 x 4 H2O 0.0025 g/l (NH4)6Mo7O24 x 4 H2O 0.0005 g/l CoCl2 x 6 H2O 0.0005 g/l CuSO4 x 5 H2O 0.0002 g/l Nicotinic acid 6e-05 g/l Pyridoxine hydrochloride 6e-05 g/l Riboflavin 6e-05 g/l Calcium pantothenate 6e-05 g/l Thiamine-HCl x 2 H2O 3e-05 g/l p-Aminobenzoic acid 3e-05 g/l Biotin 3e-06 g/l Vitamin B12 3e-06 g/l Bromocresol purple Distilled water

culture temp

  • @ref: 2008
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 2008
  • sample type: pond water
  • geographic location: Coventry, University of Warwick campus
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4650.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_421;96_1931;97_2322;98_2865;99_4650&stattab=map
  • Last taxonomy: Thiobacillus thioparus
  • 16S sequence: GU967680
  • Sequence Identity:
  • Total samples: 62
  • soil counts: 14
  • aquatic counts: 45
  • animal counts: 1
  • plant counts: 2

Safety information

risk assessment

  • @ref: 2008
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Thiobacillus thioparus strain E6 16S ribosomal RNA gene, partial sequence
  • accession: GU967680
  • length: 1389
  • database: ena
  • NCBI tax ID: 931

GC content

  • @ref: 2008
  • GC-content: 60.5

External links

@ref: 2008

culture collection no.: DSM 5369

straininfo link

  • @ref: 75634
  • straininfo: 47928

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2008Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5369)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5369
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75634Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47928.1StrainInfo: A central database for resolving microbial strain identifiers