Strain identifier
BacDive ID: 6141
Type strain: 
Species: Thiobacillus denitrificans
Strain Designation: GP3
Strain history: <- H. Hippe, GP3
NCBI tax ID(s): 36861 (species)
General
@ref: 382
BacDive-ID: 6141
DSM-Number: 739
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic
description: Thiobacillus denitrificans GP3 is a facultative anaerobe, mesophilic bacterium that was isolated from pond water.
NCBI tax id
- NCBI tax id: 36861
- Matching level: species
strain history
- @ref: 382
- history: <- H. Hippe, GP3
doi: 10.13145/bacdive6141.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Thiobacillaceae
- genus: Thiobacillus
- species: Thiobacillus denitrificans
- full scientific name: Thiobacillus denitrificans (ex Beijerinck 1904) Kelly and Harrison 1989
synonyms
- @ref: 20215
- synonym: Thiobacillus denitrificans
@ref: 382
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Hydrogenophilales
family: Thiobacillaceae
genus: Thiobacillus
species: Thiobacillus denitrificans
full scientific name: Thiobacillus denitrificans (ex Beijerinck 1904) Kelly and Harrison 1989 emend. Kelly and Wood 2000
strain designation: GP3
type strain: no
Culture and growth conditions
culture medium
- @ref: 382
- name: THIOBACILLUS DENITRIFICANS MEDIUM (DSMZ Medium 113)
- growth: yes
- link: https://mediadive.dsmz.de/medium/113
- composition: Name: THIOBACILLUS DENITRIFICANS MEDIUM (DSMZ Medium 113) Composition: Agar 14.9551 g/l (optional) Na2S2O3 x 5 H2O 4.98504 g/l KH2PO4 1.99402 g/l KNO3 1.99402 g/l NaHCO3 0.997009 g/l NH4Cl 0.997008 g/l MgSO4 x 7 H2O 0.797607 g/l FeSO4 x 7 H2O 0.00199402 g/l Na2-EDTA 0.000997009 g/l H3BO3 0.000598205 g/l CoCl2 x 6 H2O 0.000398804 g/l ZnSO4 x 7 H2O 0.000199402 g/l MnCl2 x 4 H2O 5.98205e-05 g/l Na2MoO4 x 2 H2O 5.98205e-05 g/l NiCl2 x 6 H2O 3.98804e-05 g/l CuCl2 x 2 H2O 1.99402e-05 g/l H2SO4 Distilled water
culture temp
- @ref: 382
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 382
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 382
- sample type: pond water
- geographic location: Göttingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Pond (small)
Safety information
risk assessment
- @ref: 382
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thiobacillus denitrificans strain DSM 739 16S ribosomal RNA gene, partial sequence
- accession: DQ407816
- length: 718
- database: ena
- NCBI tax ID: 36861
External links
@ref: 382
culture collection no.: DSM 739
straininfo link
- @ref: 75628
- straininfo: 47267
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 382 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 739) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-739 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 75628 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47267.1 | StrainInfo: A central database for resolving microbial strain identifiers |