Strain identifier
BacDive ID: 6111
Type strain: 
Species: Helicobacter heilmannii
Strain Designation: ASB1
Strain history: <- F. Haesebrouck, Fac. Veterinary Medicine, Univ. Ghent, Merelbeke, Belgium <- A. Smet and F. Haesebrouck; ASB1
NCBI tax ID(s): 35817 (species)
version 8.1 (current version)
General
@ref: 17751
BacDive-ID: 6111
DSM-Number: 24751
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, motile, human pathogen
description: Helicobacter heilmannii ASB1 is a microaerophile, mesophilic, motile human pathogen that was isolated from gastric mucosa of the stomach of a cat.
NCBI tax id
- NCBI tax id: 35817
- Matching level: species
strain history
- @ref: 17751
- history: <- F. Haesebrouck, Fac. Veterinary Medicine, Univ. Ghent, Merelbeke, Belgium <- A. Smet and F. Haesebrouck; ASB1
doi: 10.13145/bacdive6111.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter heilmannii
- full scientific name: Helicobacter heilmannii Smet et al. 2012
synonyms
@ref synonym 20215 Helicobacter heilmanii 20215 Helicobacter heilmannii
@ref: 17751
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter heilmannii
full scientific name: Helicobacter heilmannii Smet et al. 2012
strain designation: ASB1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.949 | |
| 69480 | 99.998 | negative |
colony morphology
- @ref: 17751
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 17751
- name: HELICOBACTER MEDIUM (DSMZ Medium 1279)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1279
- composition: Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin
culture temp
- @ref: 17751
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 17751
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 17751
- sample type: gastric mucosa of the stomach of a cat
- geographic location: Sint-Niklaas, shelter for homeless cats
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_2364.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_36;96_908;97_1058;98_1264;99_2364&stattab=map
- Last taxonomy: Helicobacter heilmannii
- 16S sequence: HM625820
- Sequence Identity:
- Total samples: 23
- aquatic counts: 6
- animal counts: 17
Safety information
risk assessment
- @ref: 17751
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17751
- description: Helicobacter heilmannii strain ASB1 16S ribosomal RNA gene, partial sequence
- accession: HM625820
- length: 1403
- database: ena
- NCBI tax ID: 35817
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Helicobacter heilmannii ASB1 | GCA_001283065 | scaffold | ncbi | 35817 |
| 66792 | Helicobacter heilmannii LMG 26292 | GCA_017979395 | contig | ncbi | 35817 |
| 66792 | Helicobacter heilmannii strain LMG 26292 | 35817.31 | wgs | patric | 35817 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.389 | no |
| flagellated | no | 65.803 | no |
| gram-positive | no | 99.334 | no |
| anaerobic | no | 85.779 | no |
| aerobic | no | 96.108 | no |
| halophile | no | 85.683 | no |
| spore-forming | no | 96.549 | no |
| glucose-util | no | 68.706 | no |
| thermophile | yes | 53.859 | yes |
| glucose-ferment | no | 82.621 | no |
External links
@ref: 17751
culture collection no.: DSM 24751, LMG 26292
straininfo link
- @ref: 75598
- straininfo: 375223
literature
- topic: Phylogeny
- Pubmed-ID: 21421932
- title: Helicobacter heilmannii sp. nov., isolated from feline gastric mucosa.
- authors: Smet A, Flahou B, D'Herde K, Vandamme P, Cleenwerck I, Ducatelle R, Pasmans F, Haesebrouck F
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.029207-0
- year: 2011
- mesh: Animals, Bacterial Proteins/chemistry, Bacterial Typing Techniques, Cat Diseases/*microbiology, Cats, Chaperonin 60/genetics/metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Dogs, Electrophoresis/methods, Gastric Mucosa/*microbiology, Genes, rRNA, Helicobacter Infections/microbiology/*veterinary, Helicobacter heilmannii/*classification/genetics/*isolation & purification/metabolism, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Urease/genetics
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17751 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24751) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24751 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 75598 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID375223.1 | StrainInfo: A central database for resolving microbial strain identifiers |