Strain identifier
BacDive ID: 61
Type strain: 
Species: Roseococcus suduntuyensis
Strain Designation: SHET
Strain history: <- V. M. Gorlenko, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SHET <- E. N. Boldareva
NCBI tax ID(s): 455361 (species)
version 9.1 (current version)
General
@ref: 8351
BacDive-ID: 61
DSM-Number: 19979
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Roseococcus suduntuyensis SHET is a Gram-negative bacterium that was isolated from soda lake, surface layer of bottom sediments.
NCBI tax id
- NCBI tax id: 455361
- Matching level: species
strain history
- @ref: 8351
- history: <- V. M. Gorlenko, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SHET <- E. N. Boldareva
doi: 10.13145/bacdive61.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseococcus
- species: Roseococcus suduntuyensis
- full scientific name: Roseococcus suduntuyensis Boldareva et al. 2009
@ref: 8351
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseococcus
species: Roseococcus suduntuyensis
full scientific name: Roseococcus suduntuyensis Boldareva et al. 2009
strain designation: SHET
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.333
Culture and growth conditions
culture medium
- @ref: 8351
- name: ROSEOCOCCUS SUDUNTUYENSIS MEDIUM (DSMZ Medium 1217)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1217
- composition: Name: ROSEOCOCCUS SUDUNTUYENSIS MEDIUM (DSMZ Medium 1217) Composition: NaHCO3 5.0 g/l NaCl 2.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Sodium acetate 1.0 g/l Sodium pyruvate 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l KH2PO4 0.5 g/l Na2SO4 0.5 g/l KCl 0.5 g/l Na2CO3 0.5 g/l NH4Cl 0.4 g/l MgCl2 x 6 H2O 0.2 g/l FeCl2 x 4 H2O 0.00149254 g/l MnCl2 x 4 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l ZnCl2 6.96517e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Vitamin B12 1e-05 g/l H3BO3 5.97015e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l HCl Distilled water
culture temp
- @ref: 8351
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 8351
- sample type: soda lake, surface layer of bottom sediments
- geographic location: Eastern Siberia, Chita oblast, lake Shuluutai-Ekhe-Torom
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_50010.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_12737;97_15462;98_35958;99_50010&stattab=map
- Last taxonomy: Roseococcus suduntuyensis subclade
- 16S sequence: EU012448
- Sequence Identity:
- Total samples: 116
- soil counts: 11
- aquatic counts: 88
- animal counts: 14
- plant counts: 3
Safety information
risk assessment
- @ref: 8351
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8351
- description: Roseococcus suduntuyensis strain SHET 16S ribosomal RNA gene, partial sequence
- accession: EU012448
- length: 1383
- database: nuccore
- NCBI tax ID: 455361
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Roseococcus suduntuyensis SHET | GCA_017311525 | contig | ncbi | 455361 |
| 66792 | Roseococcus suduntuyensis DSM 19979 | GCA_014196305 | scaffold | ncbi | 455361 |
| 66792 | Roseococcus suduntuyensis strain DSM 19979 | 455361.3 | wgs | patric | 455361 |
| 66792 | Roseococcus suduntuyensis DSM 19979 | 2829850523 | draft | img | 455361 |
GC content
- @ref: 8351
- GC-content: 69.1
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.333 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.427 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.67 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.35 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.897 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 66.371 | no |
External links
@ref: 8351
culture collection no.: DSM 19979, VKM B-2453
straininfo link
- @ref: 69745
- straininfo: 407064
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8351 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19979) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19979 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 69745 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407064.1 | StrainInfo: A central database for resolving microbial strain identifiers |