Strain identifier

BacDive ID: 6088

Type strain: No

Species: Halothiobacillus neapolitanus

Strain Designation: C

Strain history: <- D.P. Kelly, C

NCBI tax ID(s): 927 (species)

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General

@ref: 298

BacDive-ID: 6088

DSM-Number: 581

keywords: 16S sequence, Bacteria, mesophilic

description: Halothiobacillus neapolitanus C is a mesophilic bacterium that was isolated from canal water.

NCBI tax id

  • NCBI tax id: 927
  • Matching level: species

strain history

  • @ref: 298
  • history: <- D.P. Kelly, C

doi: 10.13145/bacdive6088.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Halothiobacillaceae
  • genus: Halothiobacillus
  • species: Halothiobacillus neapolitanus
  • full scientific name: Halothiobacillus neapolitanus (Parker 1957) Kelly and Wood 2000

  • synonyms

    • @ref: 20215
    • synonym: Thiobacillus neapolitanus

@ref: 298

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Halothiobacillaceae

genus: Halothiobacillus

species: Halothiobacillus neapolitanus

full scientific name: Halothiobacillus neapolitanus (Parker 1957) Kelly and Wood 2000 emend. Boden 2017

strain designation: C

type strain: no

Culture and growth conditions

culture medium

  • @ref: 298
  • name: HALOTHIOBACILLUS NEAPOLITANUS MEDIUM (DSMZ Medium 68)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/68
  • composition: Name: HALOTHIOBACILLUS NEAPOLITANUS MEDIUM (DSMZ Medium 68) Composition: Agar 15.0 g/l (optional) Na2S2O3 x 5 H2O 10.0 g/l KH2PO4 4.0 g/l K2HPO4 4.0 g/l MgSO4 x 7 H2O 0.8 g/l NH4Cl 0.4 g/l Na2-EDTA 0.25 g/l ZnSO4 x 7 H2O 0.11 g/l CaCl2 x 2 H2O 0.0277 g/l MnCl2 x 4 H2O 0.0253 g/l FeSO4 x 7 H2O 0.025 g/l CoCl2 x 6 H2O 0.00805 g/l CuSO4 x 5 H2O 0.00785 g/l (NH4)6Mo7O24 x 4 H2O 0.0055 g/l Bromocresol purple Distilled water

culture temp

  • @ref: 298
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 298
  • sample type: canal water
  • geographic location: London
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_6504.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_122;96_3076;97_3776;98_4798;99_6504&stattab=map
  • Last taxonomy: Halothiobacillus neapolitanus subclade
  • 16S sequence: AF173169
  • Sequence Identity:
  • Total samples: 515
  • soil counts: 80
  • aquatic counts: 391
  • animal counts: 30
  • plant counts: 14

Safety information

risk assessment

  • @ref: 298
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Thiobacillus neapolitanus DSM 581 16S ribosomal RNA gene, partial sequence
  • accession: AF173169
  • length: 1456
  • database: ena
  • NCBI tax ID: 927

External links

@ref: 298

culture collection no.: DSM 581, NCIMB 11333

straininfo link

  • @ref: 75576
  • straininfo: 47227

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
298Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 581)https://www.dsmz.de/collection/catalogue/details/culture/DSM-581
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75576Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47227.1StrainInfo: A central database for resolving microbial strain identifiers