Strain identifier
BacDive ID: 6062
Type strain: 
Species: Halomonas kribbensis
Strain Designation: BH843
Strain history: <- CJ Kim, KRIBB
NCBI tax ID(s): 356659 (species)
version 9 (current version)
General
@ref: 7222
BacDive-ID: 6062
DSM-Number: 17892
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Halomonas kribbensis BH843 is an aerobe, Gram-negative, motile bacterium that was isolated from soil from solar saltern.
NCBI tax id
- NCBI tax id: 356659
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7222 | <- C.-J. Kim, Korea Res. Inst. of Biosci. and Biotechnol. (KRIBB); BH843 <- J.-M. Lim |
| 67771 | <- CJ Kim, KRIBB |
doi: 10.13145/bacdive6062.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas kribbensis
- full scientific name: Halomonas kribbensis Jeon et al. 2007
@ref: 7222
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas kribbensis
full scientific name: Halomonas kribbensis Jeon et al. 2007
strain designation: BH843
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 32303 | negative | 2.2 µm | 1.6 µm | rod-shaped | yes |
| 67771 | negative |
pigmentation
- @ref: 32303
- production: yes
Culture and growth conditions
culture medium
- @ref: 7222
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 30.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7222 | positive | growth | 33 |
| 32303 | positive | growth | 10-40 |
| 32303 | positive | optimum | 33.5 |
| 67771 | positive | growth | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32303 | positive | growth | 5.5-9.5 | alkaliphile |
| 32303 | positive | optimum | 8.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 32303
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32303 | NaCl | positive | growth | 01-14 % |
| 32303 | NaCl | positive | optimum | 5 % |
observation
- @ref: 32303
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32303 | 4853 | esculin | + | hydrolysis |
| 32303 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32303 | catalase | + | 1.11.1.6 |
| 32303 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7222 | soil from solar saltern | Yellow Sea | Republic of Korea | KOR | Asia |
| 67771 | From a solar saltern in Korea | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_30309.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_14847;97_18130;98_22551;99_30309&stattab=map
- Last taxonomy: Halomonas kribbensis subclade
- 16S sequence: DQ280368
- Sequence Identity:
- Total samples: 4
- aquatic counts: 4
Safety information
risk assessment
- @ref: 7222
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7222
- description: Halomonas kribbensis strain BH843 16S ribosomal RNA gene, partial sequence
- accession: DQ280368
- length: 1417
- database: nuccore
- NCBI tax ID: 356659
GC content
| @ref | GC-content |
|---|---|
| 7222 | 66.0 |
| 32303 | 66 |
External links
@ref: 7222
culture collection no.: DSM 17892, KCTC 12584
straininfo link
- @ref: 75549
- straininfo: 399808
literature
- topic: Phylogeny
- Pubmed-ID: 17911281
- title: Halomonas kribbensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea.
- authors: Jeon CO, Lim JM, Lee JR, Lee GS, Park DJ, Lee JC, Oh HW, Kim CJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65285-0
- year: 2007
- mesh: Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Halomonas/chemistry/*classification/genetics/*isolation & purification, Korea, Locomotion/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7222 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17892) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17892 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32303 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28542 | 28776041 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75549 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399808.1 | StrainInfo: A central database for resolving microbial strain identifiers |