Strain identifier

BacDive ID: 6005

Type strain: No

Species: Cobetia marina

Strain Designation: A 140

Strain history: CIP <- 1974, M. Véron, Paris, France <- P. Baumann, Univ. Hawaii, USA: strain 140, Pseudomonas marina

NCBI tax ID(s): 28258 (species)

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General

@ref: 12717

BacDive-ID: 6005

DSM-Number: 50416

keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped

description: Cobetia marina A 140 is a Gram-negative, motile, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 28258
  • Matching level: species

strain history

@refhistory
12717<- ICPB <- P. Baumann, A 140
67770IAM 12928 <-- DSM 50416 <-- ICPB 3528 <-- P. Baumann A140.
120796CIP <- 1974, M. Véron, Paris, France <- P. Baumann, Univ. Hawaii, USA: strain 140, Pseudomonas marina

doi: 10.13145/bacdive6005.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Cobetia
  • species: Cobetia marina
  • full scientific name: Cobetia marina (Cobet et al. 1970) Arahal et al. 2002

  • synonyms

    @refsynonym
    20215Pseudomonas marina
    20215Halomonas marina
    20215Arthrobacter marinus
    20215Halomonas halodurans
    20215Deleya marina

@ref: 12717

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Cobetia

species: Cobetia marina

full scientific name: Cobetia marina (Cobet et al. 1970) Arahal et al. 2002 emend. Romanenko et al. 2013

strain designation: A 140

type strain: no

Morphology

cell morphology

  • @ref: 120796
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12717MARINE AGAR (DSMZ Medium 123)yeshttps://mediadive.dsmz.de/medium/123Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water
33489Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120796CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
12717positivegrowth26
33489positivegrowth25
46439positivegrowth26
67770positivegrowth25
120796positivegrowth5-30
120796nogrowth41

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
120796NaClpositivegrowth2-10 %
120796NaClnogrowth0 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12079617632nitrate-reduction
12079616301nitrite-reduction

antibiotic resistance

  • @ref: 120796
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120796
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120796oxidase-
120796gelatinase-
120796tryptophan deaminase-
120796urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
12717seawater
46439Seawater,direct isolation with D-galactoseoff coast of HawaiiUSAUSANorth America
120796Environment, SeawaterHawaiiUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
127171Risk group (German classification)
1207961Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
124043Deleya marina 16S rRNA.D11177148nuccore28258
124043Deleya marina 16S rRNA.D11226212nuccore28258

GC content

@refGC-contentmethod
6777063.3Buoyant density centrifugation (BD)
6777063thermal denaturation, midpoint method (Tm)

External links

@ref: 12717

culture collection no.: DSM 50416, ATCC 27129, ICPB 3528, CCUG 16092, LMG 2218, CIP 74.10, JCM 20776, IAM 12928, NCIMB 1966

straininfo link

  • @ref: 75493
  • straininfo: 2166

Reference

@idauthorscataloguedoi/urltitle
12717Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50416)https://www.dsmz.de/collection/catalogue/details/culture/DSM-50416
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33489Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10700
46439Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 16092)https://www.ccug.se/strain?id=16092
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75493Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2166.1StrainInfo: A central database for resolving microbial strain identifiers
120796Curators of the CIPCollection of Institut Pasteur (CIP 74.10)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2074.10
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy