Strain identifier

BacDive ID: 60

Type strain: Yes

Species: Roseococcus thiosulfatophilus

Strain history: <- V. Yurkov, RB3

NCBI tax ID(s): 35813 (species)

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General

@ref: 3292

BacDive-ID: 60

DSM-Number: 8511

keywords: 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, coccus-shaped

description: Roseococcus thiosulfatophilus DSM 8511 is an aerobe, chemoorganotroph, mesophilic bacterium that was isolated from cyanobacterial mat from hot spring.

NCBI tax id

  • NCBI tax id: 35813
  • Matching level: species

strain history

  • @ref: 3292
  • history: <- V. Yurkov, RB3

doi: 10.13145/bacdive60.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseococcus
  • species: Roseococcus thiosulfatophilus
  • full scientific name: Roseococcus thiosulfatophilus Yurkov et al. 1994

@ref: 3292

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseococcus

species: Roseococcus thiosulfatophilus

full scientific name: Roseococcus thiosulfatophilus Yurkov et al. 1994

type strain: yes

Morphology

cell morphology

  • @ref: 23246
  • gram stain: negative
  • cell length: 1.3-1.6 µm
  • cell width: 0.9-1.3 µm
  • cell shape: coccus-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

colony morphology

  • @ref: 23246
  • colony color: pink

pigmentation

@refproductionname
23246yesBacteriochlorophyll a
23246yescarotenoids

Culture and growth conditions

culture medium

  • @ref: 3292
  • name: ERYTHROMICROBIUM AND ROSEOCOCCUS MEDIUM (DSMZ Medium 767)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/767
  • composition: Name: ERYTHROMICROBIUM AND ROSEOCOCCUS MEDIUM (DSMZ Medium 767) Composition: Yeast extract 1.0 g/l Na-acetate 1.0 g/l Bacto peptone 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.3 g/l NH4Cl 0.3 g/l KCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Vitamin B12 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 3292
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23246
  • oxygen tolerance: aerobe

nutrition type

@reftype
23246chemoorganotroph
23246photoheterotroph

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2324622599arabinose-growth
2324616150benzoate-growth
2324617968butyrate-growth
2324616236ethanol-growth
2324615740formate-growth
2324628757fructose-growth
2324629806fumarate-growth
2324629805glycolate-growth
2324629864mannitol-growth
2324617790methanol-growth
2324617272propionate-growth
2324633942ribose-growth
2324617992sucrose-growth
23246132950tartrate-growth
232465291gelatin-hydrolysis
2324628017starch-hydrolysis
2324653426tween 80-hydrolysis
2324630089acetate+carbon source
2324616947citrate+carbon source
2324624996lactate+carbon source
2324615361pyruvate+carbon source
2324630031succinate+carbon source
23246casein+hydrolysis
2324616094thiosulfate+oxidation
2324617234glucose+/-growth
2324617754glycerol+/-growth
2324617306maltose+/-growth

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2324617334penicillinyesyes20 Unit (disc)
2324628669bacitracinyesyes
2324617833gentamicinyesyes
232466472lincomycinyesyes
232468309polymyxin byesyes100 Unit (disc)
2324671321fusidateyesyes0.5 µg (disc)
2324617698chloramphenicolyesyes100 µg (disc)
2324617076streptomycinyesyes50 µg (disc)
232462637amikacinyesyes
2324648923erythromycinyesyes
232466104kanamycinyesyes
232467507neomycinyesyes
2324627902tetracyclineyesyes
2324628001vancomycinyesyes

enzymes

@refvalueactivityec
23246catalase+1.11.1.6
23246cytochrome oxidase+1.9.3.1
23246Ribulose-bisphosphate carboxylase-4.1.1.39

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3292cyanobacterial mat from hot springLake Baykal regionRussiaRUSAsia
23246freshwater cyanobacterial mat of a thermal alkaline sulfide spring (54°C; pH 9.3; 7.4 mg of sulfide per liter; 1.6 mg of oxygen per liter)

isolation source categories

Cat1Cat2Cat3
#Condition#Thermophilic (>45°C)
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Thermal spring
#Environmental#Microbial community#Microbial mat
#Host#Microbial#Bacteria

taxonmaps

  • @ref: 69479
  • File name: preview.99_25476.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_12737;97_15462;98_19151;99_25476&stattab=map
  • Last taxonomy: Roseococcus thiosulfatophilus subclade
  • 16S sequence: X72908
  • Sequence Identity:
  • Total samples: 10
  • soil counts: 1
  • aquatic counts: 8
  • animal counts: 1

Safety information

risk assessment

  • @ref: 3292
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3292
  • description: R.thiosulatophilus gene for 16S rRNA
  • accession: X72908
  • length: 1426
  • database: ena
  • NCBI tax ID: 35813

GC content

  • @ref: 23246
  • GC-content: 70.40
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3292

culture collection no.: DSM 8511, RB 3

straininfo link

  • @ref: 69744
  • straininfo: 43722

literature

  • Pubmed-ID: 27682119
  • title: The Effect of Tellurite on Highly Resistant Freshwater Aerobic Anoxygenic Phototrophs and Their Strategies for Reduction.
  • authors: Maltman C, Yurkov V
  • journal: Microorganisms
  • DOI: 10.3390/microorganisms3040826
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3292Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8511)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8511
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23246VLADIMIR YURKOV, ERKO STACKEBRANDT, ANDREW HOLMES, JOHN A. FUERST, P. HUGENHOLTZ, JOCHEN GOLECKI, NASSER GAD'ON, VLADIMIR M. GORLENKO, ELENA I. KOMPANTSEVA, GERHART DREWS10.1099/00207713-44-3-427Phylogenetic Positions of Novel Aerobic, Bacteriochlorophyll a-Containing Bacteria and Description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.IJSEM 44: 427-434 19947520734
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69744Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43722.1StrainInfo: A central database for resolving microbial strain identifiers