Strain identifier

BacDive ID: 5965

Type strain: Yes

Species: Natronococcus occultus

Strain Designation: SP4

Culture col. no.: DSM 3396, ATCC 43101, CCM 3871, NCMB 2192

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1377

BacDive-ID: 5965

DSM-Number: 3396

keywords: Archaea, 16S sequence, genome sequence, mesophilic

description: Natronococcus occultus SP4 is a mesophilic archaeon of the family Natrialbaceae.

strain history: <- B.J. Tindall <- Ross, SP4

doi: 10.13145/bacdive5965.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Halobacteria
  • order: Natrialbales
  • family: Natrialbaceae
  • genus: Natronococcus
  • species: Natronococcus occultus
  • full scientific name: Natronococcus occultus Tindall et al. 1984

@ref: 1377

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Natrialbaceae

genus: Natronococcus

species: Natronococcus occultus

full scientific name: Natronococcus occultus Tindall et al. 1984

strain designation: SP4

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1377NATRONOBACTERIA MEDIUM (DSMZ Medium 371)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium371.pdf
39037MEDIUM 136 - for Natronococcus occultus, Natrialba magadii and Halorubrum vacuolatumyesSolution 2 - M0437 (600.000 ml);Solution 1 - M0437 (400.000 ml)

culture temp

@refgrowthtypetemperaturerange
1377positivegrowth37mesophilic
39037positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 1377
  • geographic location: Magadi Lake
  • country: Kenya
  • origin.country: KEN
  • continent: Africa

Safety information

risk assessment

  • @ref: 1377
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Natronococcus occultus gene for 16S ribosomal RNA, partial sequence, strain: JCM 8859AB4779811432ena694430
20218Natronococcus occultus gene for 16S rRNA, complete sequence, strain: JCM 8859AB6634701472ena694430
20218N.occultus 16S ribosomal RNAZ283781464ena694430

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Natronococcus occultus SP4694430.10plasmidpatric694430
66792Natronococcus occultus SP4694430.9plasmidpatric694430

External links

@ref: 1377

culture collection no.: DSM 3396, ATCC 43101, CCM 3871, NCMB 2192

straininfo link

@refpassport
20218http://www.straininfo.net/strains/153172
20218http://www.straininfo.net/strains/121105
20218http://www.straininfo.net/strains/153171
20218http://www.straininfo.net/strains/121106

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1377Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3396)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3396
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39037Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16469
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)