Strain identifier
BacDive ID: 5922
Type strain: 
Species: Psychrobacter sp.
Strain Designation: HII-4
Strain history: <- NCIMB <- K. Hayashi, HII-4. Originally deposited as "Halococcus nondenitrificans"
NCBI tax ID(s): 56811 (species)
version 8.1 (current version)
General
@ref: 2280
BacDive-ID: 5922
DSM-Number: 5683
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Psychrobacter sp. HII-4 is a mesophilic bacterium that was isolated from salted salmon.
NCBI tax id
- NCBI tax id: 56811
- Matching level: species
strain history
- @ref: 2280
- history: <- NCIMB <- K. Hayashi, HII-4. Originally deposited as "Halococcus nondenitrificans"
doi: 10.13145/bacdive5922.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter sp.
- full scientific name: Psychrobacter Juni and Heym 1986
@ref: 2280
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter sp.
full scientific name: Psychrobacter sp.
strain designation: HII-4
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2280 | OXOID NUTRIENT BROTH (DSMZ Medium 948) | yes | https://mediadive.dsmz.de/medium/948 | Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water |
| 2280 | NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) | yes | https://mediadive.dsmz.de/medium/605 | Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water |
culture temp
- @ref: 2280
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 2280
- sample type: salted salmon
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fishes | #Salmonidae |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_22719.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_4714;99_22719&stattab=map
- Last taxonomy: Psychrobacter celer
- 16S sequence: LN649159
- Sequence Identity:
- Total samples: 229
- soil counts: 4
- aquatic counts: 90
- animal counts: 134
- plant counts: 1
Sequence information
16S sequences
- @ref: 2280
- description: Psychrobacter sp. HII-4 partial 16S rRNA gene, strain DSM 5683, isolate HII-4
- accession: LN649159
- length: 1512
- database: ena
- NCBI tax ID: 1569264
Genome sequences
- @ref: 66792
- description: Psychrobacter sp. HII-4
- accession: 1569264.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1569264
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 84.041 | no |
| gram-positive | no | 98.294 | no |
| anaerobic | no | 98.574 | no |
| aerobic | yes | 83.862 | no |
| halophile | yes | 79.388 | no |
| spore-forming | no | 97.301 | no |
| thermophile | no | 99.212 | yes |
| glucose-util | no | 58.177 | no |
| flagellated | no | 89.38 | no |
| glucose-ferment | no | 92.824 | no |
External links
@ref: 2280
culture collection no.: DSM 5683, ATCC 25863, NCIMB 1814
straininfo link
- @ref: 75403
- straininfo: 47981
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2280 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5683) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5683 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75403 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47981.1 | StrainInfo: A central database for resolving microbial strain identifiers |