Strain identifier
BacDive ID: 5902
Type strain: 
Species: Haloarcula sinaiiensis
Strain history: M. Kamekura <-- M. Kate <-- W. Stoeckenius <-- B. Javor.
NCBI tax ID(s): 44098 (species)
version 8.1 (current version)
General
@ref: 3443
BacDive-ID: 5902
DSM-Number: 8928
keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative
description: Haloarcula sinaiiensis DSM 8928 is a mesophilic, Gram-negative archaeon that was isolated from salt brine.
NCBI tax id
- NCBI tax id: 44098
- Matching level: species
strain history
| @ref | history |
|---|---|
| 3443 | <- ATCC <- W. Stoeckenius, strain BJSG-2 (Haloarcula sinaliensis) <- B. Javor |
| 67770 | M. Kamekura <-- M. Kate <-- W. Stoeckenius <-- B. Javor. |
doi: 10.13145/bacdive5902.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Haloarculaceae
- genus: Haloarcula
- species: Haloarcula sinaiiensis
- full scientific name: Haloarcula sinaiiensis Torreblanca et al. 1986
synonyms
- @ref: 20215
- synonym: Haloarcula sinaiiensis
@ref: 3443
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Haloarculaceae
genus: Haloarcula
species: Haloarcula sp.
full scientific name: Haloarcula sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.967
Culture and growth conditions
culture medium
- @ref: 3443
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 3443 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.84 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 3443 | salt brine | Israel | ISR | Asia |
| 67770 | Brine at the Red Sea sabkha |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Haloarcula sinaiiensis gene for 16S rRNA, strain: ATCC33800 | D14129 | 1471 | ena | 662476 |
| 20218 | Haloarcula sinaiiensis gene for 16S rRNA, strain: ATCC 33800 | D14130 | 1470 | ena | 662476 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haloarcula sinaiiensis ATCC 33800 | GCA_018200015 | complete | ncbi | 662476 |
| 67770 | Haloarcula sinaiiensis ATCC 33800 | GCA_000337275 | contig | ncbi | 662476 |
| 66792 | Haloarcula sinaiiensis ATCC 33800 | 662476.12 | complete | patric | 662476 |
| 66792 | Haloarcula sinaiiensis ATCC 33800 | 662476.7 | wgs | patric | 662476 |
GC content
- @ref: 67770
- GC-content: 59.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.065 | no |
| gram-positive | no | 97.683 | no |
| anaerobic | no | 95.657 | no |
| aerobic | yes | 85.115 | no |
| halophile | yes | 87.3 | no |
| spore-forming | no | 93.828 | no |
| thermophile | no | 75.381 | yes |
| glucose-util | yes | 89.978 | no |
| motile | no | 78.252 | no |
| glucose-ferment | no | 82.918 | no |
External links
@ref: 3443
culture collection no.: DSM 8928, ATCC 33800, JCM 8862, CCM 3665, IAM 13182, NCIMB 2268
straininfo link
- @ref: 75382
- straininfo: 40696
literature
- Pubmed-ID: 34435862
- title: Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800.
- authors: Fomenkov A, DasSarma P, Kennedy SP, Roberts RJ, DasSarma S
- journal: Microbiol Resour Announc
- DOI: 10.1128/MRA.00619-21
- year: 2021
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3443 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8928) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8928 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 75382 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40696.1 | StrainInfo: A central database for resolving microbial strain identifiers |