Strain identifier
BacDive ID: 59
Type strain: 
Species: Rhodopila globiformis
Strain Designation: 7950
Strain history: CIP <- 2003, DSMZ <- N. Pfennig: strain 7950
NCBI tax ID(s): 1071 (species)
version 8.1 (current version)
General
@ref: 2128
BacDive-ID: 59
DSM-Number: 161
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped
description: Rhodopila globiformis 7950 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from sulfur spring.
NCBI tax id
- NCBI tax id: 1071
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2128 | <- N. Pfennig, 7950 |
| 119646 | CIP <- 2003, DSMZ <- N. Pfennig: strain 7950 |
doi: 10.13145/bacdive59.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Rhodopila
- species: Rhodopila globiformis
- full scientific name: Rhodopila globiformis (Pfennig 1974) Imhoff et al. 1984
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas globiformis
@ref: 2128
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Rhodopila
species: Rhodopila globiformis
full scientific name: Rhodopila globiformis (Pfennig 1974) Imhoff et al. 1984
strain designation: 7950
type strain: yes
Morphology
cell morphology
- @ref: 119646
- gram stain: positive
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2128 | RHODOPSEUDOMONAS GLOBIFORMIS MEDIUM (DSMZ Medium 25) | yes | https://mediadive.dsmz.de/medium/25 | Name: RHODOPSEUDOMONAS GLOBIFORMIS MEDIUM (DSMZ Medium 25) Composition: Mannitol 1.5 g/l Na-gluconate 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l Yeast extract 0.25 g/l Sodium thiosulfate pentahydrate 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l p-Aminobenzoic acid 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Biotin 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
| 36597 | MEDIUM 462 - for Rodophila globiformis | yes | Distilled water make up to (1000.000 ml);Sodium chloride (0.400 g);Magnesium sulphate heptahydrate (0.400 g);Calcium chloride dihydrate (0.050 g);Yeast extract (0.250 g);Potassium di-hydrogen phosphate (0.500 g);Ammonium chloride (0.400 g);Mannitol (1.500 | |
| 119646 | CIP Medium 462 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=462 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2128 | positive | growth | 25 | mesophilic |
| 36597 | positive | growth | 25 | mesophilic |
| 119646 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 2128
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2128 | sulfur spring | Wyoming, Yellowstone Natl. Park | USA | USA | North America |
| 119646 | Environment, Sulfur spring | United States of America | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_88374.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_36667;97_46587;98_61044;99_88374&stattab=map
- Last taxonomy: Rhodopila globiformis subclade
- 16S sequence: D86513
- Sequence Identity:
- Total samples: 13690
- soil counts: 9890
- aquatic counts: 612
- animal counts: 650
- plant counts: 2538
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 2128 | 1 | Risk group (German classification) |
| 119646 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Rhodopila globiformis DNA for 16S rRNA
- accession: D86513
- length: 1465
- database: ena
- NCBI tax ID: 1071
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodopila globiformis DSM 161 | GCA_002937115 | scaffold | ncbi | 1071 |
| 66792 | Rhodopila globiformis strain DSM 161 | 1071.7 | wgs | patric | 1071 |
| 66792 | Rhodopila globiformis DSM 161 | 2831737867 | draft | img | 1071 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 79.181 | no |
| gram-positive | no | 98.497 | no |
| anaerobic | no | 80.248 | yes |
| aerobic | yes | 52.679 | yes |
| halophile | no | 92.4 | no |
| spore-forming | no | 90.799 | no |
| glucose-util | yes | 84.016 | no |
| thermophile | no | 94.122 | no |
| motile | yes | 73.692 | no |
| glucose-ferment | no | 89.918 | no |
External links
@ref: 2128
culture collection no.: DSM 161, ATCC 35887, Pfennig 7950, CIP 107835, LMG 4312
straininfo link
- @ref: 69743
- straininfo: 4899
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 29423563 | New insights into the metabolic potential of the phototrophic purple bacterium Rhodopila globiformis DSM 161(T) from its draft genome sequence and evidence for a vanadium-dependent nitrogenase. | Imhoff JF, Rahn T, Kunzel S, Neulinger SC | Arch Microbiol | 10.1007/s00203-018-1489-z | 2018 | Acetobacteraceae/*genetics/isolation & purification/*metabolism/radiation effects, Bacterial Proteins/genetics/*metabolism, Base Composition, Base Sequence, Chromosome Mapping, *Genome, Bacterial, Hot Springs/microbiology, Nitrogenase/genetics/*metabolism, Photosynthetic Reaction Center Complex Proteins/genetics/metabolism, Phototrophic Processes, Vanadium/metabolism | Genetics |
| Phylogeny | 31355740 | Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage. | Muhadesi JB, Huang Y, Wang BJ, Jiang CY, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003618 | 2019 | Acetobacteraceae/*classification/isolation & purification, Acids, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2128 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 161) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-161 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 36597 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5390 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69743 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4899.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 119646 | Curators of the CIP | Collection of Institut Pasteur (CIP 107835) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107835 |