Strain identifier
BacDive ID: 5886
Type strain: 
Species: Natrinema hispanicum
Strain Designation: FP1
Strain history: <- B. Nicolaus, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; FP1 <- I. Romano
NCBI tax ID(s): 392421 (species)
version 8.1 (current version)
General
@ref: 7507
BacDive-ID: 5886
DSM-Number: 18328
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natrinema hispanicum FP1 is a mesophilic archaeon that was isolated from Fuente de Piedra salt lake.
NCBI tax id
- NCBI tax id: 392421
- Matching level: species
strain history
- @ref: 7507
- history: <- B. Nicolaus, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; FP1 <- I. Romano
doi: 10.13145/bacdive5886.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natrinema
- species: Natrinema hispanicum
- full scientific name: Natrinema hispanicum (Romano et al. 2007) de la Haba et al. 2022
synonyms
- @ref: 20215
- synonym: Haloterrigena hispanica
@ref: 7507
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Natrialbaceae
genus: Haloterrigena
species: Haloterrigena hispanica
full scientific name: Haloterrigena hispanica Romano et al. 2007
strain designation: FP1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7507
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
- @ref: 7507
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7507
- sample type: Fuente de Piedra salt lake
- geographic location: Southern Spain, Fuente de Piedra
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_191842.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_69227;97_90337;98_122788;99_191842&stattab=map
- Last taxonomy: Haloterrigena hispanica
- 16S sequence: AB663443
- Sequence Identity:
- Total samples: 72
- soil counts: 5
- aquatic counts: 67
Safety information
risk assessment
- @ref: 7507
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Haloterrigena hispanica gene for 16S rRNA, complete sequence, strain: DSM 18328 | AB663443 | 1474 | ena | 392421 |
| 7507 | Haloterrigena hispanica 16S rRNA gene, type strain FP1T | AM285297 | 1352 | ena | 392421 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natrinema hispanicum DSM 18328 | GCA_004217335 | contig | ncbi | 392421 |
| 66792 | Haloterrigena hispanica DSM 18328 | 2816332110 | draft | img | 392421 |
| 66792 | Haloterrigena hispanica strain DSM 18328 | 392421.6 | wgs | patric | 392421 |
External links
@ref: 7507
culture collection no.: DSM 18328, ATCC BAA 1310
straininfo link
- @ref: 75366
- straininfo: 298303
literature
- topic: Phylogeny
- Pubmed-ID: 17625183
- title: Haloterrigena hispanica sp. nov., an extremely halophilic archaeon from Fuente de Piedra, southern Spain.
- authors: Romano I, Poli A, Finore I, Huertas FJ, Gambacorta A, Pelliccione S, Nicolaus G, Lama L, Nicolaus B
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64895-0
- year: 2007
- mesh: Base Composition, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Glycolipids/analysis, Halobacteriaceae/chemistry/*classification/*isolation & purification/physiology, Magnesium Chloride/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Spain, Temperature, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7507 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18328) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18328 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75366 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID298303.1 | StrainInfo: A central database for resolving microbial strain identifiers |