Strain identifier
BacDive ID: 5805
Type strain: 
Species: Geobacter lovleyi
Strain Designation: SZ
Strain history: <- Y. Sung, Georgia Inst. Technology, School of Civil and Environmental Engineering, Atlanta, USA; SZ
NCBI tax ID(s): 313985 (species)
version 8.1 (current version)
General
@ref: 6870
BacDive-ID: 5805
DSM-Number: 17278
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Geobacter lovleyi SZ is an anaerobe, mesophilic bacterium that was isolated from aquatic sediment material.
NCBI tax id
- NCBI tax id: 313985
- Matching level: species
strain history
- @ref: 6870
- history: <- Y. Sung, Georgia Inst. Technology, School of Civil and Environmental Engineering, Atlanta, USA; SZ
doi: 10.13145/bacdive5805.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Geobacteraceae
- genus: Geobacter
- species: Geobacter lovleyi
- full scientific name: Geobacter lovleyi Sung et al. 2009
synonyms
- @ref: 20215
- synonym: Trichlorobacter lovleyi
@ref: 6870
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Geobacteraceae
genus: Trichlorobacter
species: Trichlorobacter lovleyi
full scientific name: Trichlorobacter lovleyi (Sung et al. 2009) Waite et al. 2020
strain designation: SZ
type strain: yes
Morphology
colony morphology
- @ref: 6870
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 6870
- name: DEHALOBACTER RESTRICTUS MEDIUM (TCE) (DSMZ Medium 732)
- growth: yes
- link: https://mediadive.dsmz.de/medium/732
- composition: Name: DEHALOBACTER RESTRICTUS MEDIUM (TCE) (DSMZ Medium 732) Composition: NaHCO3 3.7004 g/l K2HPO4 0.644841 g/l Na-acetate 0.45635 g/l Na2S x 9 H2O 0.297619 g/l (NH4)2CO3 0.267857 g/l NaH2PO4 x H2O 0.168651 g/l CaCl2 x 2 H2O 0.109127 g/l Peptone 0.0992068 g/l MgCl2 x 6 H2O 0.0992064 g/l FeCl2 x 4 H2O 0.00198413 g/l Na2-EDTA 0.000496032 g/l Sodium resazurin 0.000496032 g/l Pyridoxine hydrochloride 0.000297619 g/l Nicotinic acid 0.000198413 g/l Thiamine-HCl x 2 H2O 0.000198413 g/l CoCl2 x 6 H2O 0.000188492 g/l Vitamin B12 9.92064e-05 g/l Calcium pantothenate 9.92064e-05 g/l MnCl2 x 4 H2O 9.92064e-05 g/l p-Aminobenzoic acid 7.93651e-05 g/l ZnCl2 6.94444e-05 g/l Calcium D-(+)-pantothenate 4.96032e-05 g/l (DL)-alpha-Lipoic acid 4.96032e-05 g/l Thiamine HCl 4.96032e-05 g/l Riboflavin 4.96032e-05 g/l Na2MoO4 x 2 H2O 3.57143e-05 g/l NiCl2 x 6 H2O 2.38095e-05 g/l Folic acid 1.98413e-05 g/l D-(+)-biotin 1.98413e-05 g/l Biotin 1.98413e-05 g/l AlCl3 9.92063e-06 g/l H3BO3 5.95238e-06 g/l CuCl2 x 2 H2O 1.98413e-06 g/l Hexadecane Tetrachloroethene Distilled water
culture temp
- @ref: 6870
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 6870
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 6870
- sample type: aquatic sediment material
- geographic location: Su-Zi, Su-Zi Creek
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Sediment
taxonmaps
- @ref: 69479
- File name: preview.99_8010.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15357;96_2975;97_3658;98_4628;99_8010&stattab=map
- Last taxonomy: Geobacter lovleyi
- 16S sequence: AY914177
- Sequence Identity:
- Total samples: 248
- soil counts: 28
- aquatic counts: 210
- animal counts: 2
- plant counts: 8
Safety information
risk assessment
- @ref: 6870
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6870
- description: Geobacter lovleyi 16S ribosomal RNA gene, partial sequence
- accession: AY914177
- length: 1478
- database: ena
- NCBI tax ID: 398767
Genome sequences
- @ref: 66792
- description: Trichlorobacter lovleyi SZ
- accession: GCA_000020385
- assembly level: complete
- database: ncbi
- NCBI tax ID: 398767
GC content
- @ref: 6870
- GC-content: 56.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 75.393 | no |
| flagellated | no | 83.787 | no |
| gram-positive | no | 98.352 | no |
| anaerobic | yes | 99.131 | no |
| aerobic | no | 96.004 | no |
| halophile | no | 94.82 | no |
| spore-forming | no | 91.549 | no |
| thermophile | no | 96.487 | yes |
| glucose-util | yes | 50.811 | no |
| glucose-ferment | no | 86.9 | no |
External links
@ref: 6870
culture collection no.: DSM 17278, ATCC BAA 1151
straininfo link
- @ref: 75284
- straininfo: 297677
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6870 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17278) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17278 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75284 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297677.1 | StrainInfo: A central database for resolving microbial strain identifiers |