Strain identifier

BacDive ID: 5779

Type strain: Yes

Species: Ilyobacter delafieldii

Strain Designation: 10cr1

Strain history: <- P.H. Janssen, 10cr1

NCBI tax ID(s): 933068 (species)

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General

@ref: 2297

BacDive-ID: 5779

DSM-Number: 5704

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Ilyobacter delafieldii 10cr1 is an anaerobe, mesophilic bacterium that was isolated from anaerobic estuarine sediment.

NCBI tax id

  • NCBI tax id: 933068
  • Matching level: species

strain history

  • @ref: 2297
  • history: <- P.H. Janssen, 10cr1

doi: 10.13145/bacdive5779.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Ilyobacter
  • species: Ilyobacter delafieldii
  • full scientific name: Ilyobacter delafieldii Janssen and Harfoot 1991

@ref: 2297

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Ilyobacter

species: Ilyobacter delafieldii

full scientific name: Ilyobacter delafieldii Janssen and Harfoot 1991

strain designation: 10cr1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2297
  • name: CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/500
  • composition: Name: CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500; with strain-specific modifications) Composition: NaHCO3 2.98507 g/l NaCl 2.23881 g/l Sodium crotonate 1.99005 g/l Yeast extract 0.995025 g/l NH4Cl 0.497512 g/l MgSO4 x 7 H2O 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Pyridoxine hydrochloride 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l Riboflavin 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

culture temp

  • @ref: 2297
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2297
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2297
  • sample type: anaerobic estuarine sediment
  • geographic location: Whangarei Harbour
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_12125.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_3674;97_4513;98_5796;99_12125&stattab=map
  • Last taxonomy: Firmicutes
  • 16S sequence: FR733681
  • Sequence Identity:
  • Total samples: 261
  • soil counts: 39
  • aquatic counts: 147
  • animal counts: 71
  • plant counts: 4

Safety information

risk assessment

  • @ref: 2297
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2297
  • description: Ilyobacter delafieldii partial 16S rRNA gene, type strain DSM5704T
  • accession: FR733681
  • length: 1499
  • database: ena
  • NCBI tax ID: 933068

GC content

  • @ref: 2297
  • GC-content: 29.0

External links

@ref: 2297

culture collection no.: DSM 5704, ATCC 49679

straininfo link

  • @ref: 75258
  • straininfo: 8998

Reference

@idauthorscataloguedoi/urltitle
2297Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5704)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5704
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75258Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8998.1StrainInfo: A central database for resolving microbial strain identifiers