Strain identifier

BacDive ID: 5738

Type strain: Yes

Species: Kriegella aquimaris

Strain history: M. Suzuki R3665 <-- O. I. Nedashkovskaya.

NCBI tax ID(s): 192904 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8368

BacDive-ID: 5738

DSM-Number: 19886

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Kriegella aquimaris DSM 19886 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 192904
  • Matching level: species

strain history

@refhistory
8368<- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 3665
67770M. Suzuki R3665 <-- O. I. Nedashkovskaya.

doi: 10.13145/bacdive5738.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Kriegella
  • species: Kriegella aquimaris
  • full scientific name: Kriegella aquimaris Nedashkovskaya et al. 2008

@ref: 8368

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Kriegella

species: Kriegella aquimaris

full scientific name: Kriegella aquimaris Nedashkovskaya et al. 2008

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
32598negative1.2-1.4 µm0.4-0.5 µmrod-shapedyesgliding
69480negative99.934

pigmentation

  • @ref: 32598
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8368
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8368positivegrowth28mesophilic
32598positivegrowth04-37
32598positiveoptimum25-28mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepH
32598positivegrowth7
32598positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32598
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
32598no
69481no100
69480no99.948

halophily

@refsaltgrowthtested relationconcentration
32598NaClpositivegrowth01-06 %
32598NaClpositiveoptimum01-02 %

observation

@refobservation
32598aggregates in chains
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3259822599arabinose+carbon source
3259817057cellobiose+carbon source
3259833984fucose+carbon source
3259828260galactose+carbon source
3259817234glucose+carbon source
3259817716lactose+carbon source
3259817306maltose+carbon source
3259828053melibiose+carbon source
3259816634raffinose+carbon source
3259826546rhamnose+carbon source
3259817992sucrose+carbon source
3259818222xylose+carbon source
325984853esculin+hydrolysis

enzymes

  • @ref: 32598
  • value: cytochrome oxidase
  • activity: +
  • ec: 1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8368seawaterSea of Japan, Amursky BayRussiaRUSAsia
67770Seawater sample from Amursky Bay of the Sea of Japan

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_146631.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_35876;97_72267;98_97099;99_146631&stattab=map
  • Last taxonomy: Kriegella aquimaris subclade
  • 16S sequence: AB084262
  • Sequence Identity:
  • Total samples: 859
  • soil counts: 44
  • aquatic counts: 643
  • animal counts: 165
  • plant counts: 7

Safety information

risk assessment

  • @ref: 8368
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8368
  • description: Kriegella aquimaris gene for 16S rRNA, partial sequence
  • accession: AB084262
  • length: 1382
  • database: ena
  • NCBI tax ID: 192904

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kriegella aquimaris strain DSM 19886192904.4wgspatric192904
66792Kriegella aquimaris DSM 198862622736525draftimg192904
67770Kriegella aquimaris DSM 19886GCA_900103215scaffoldncbi192904

GC content

@refGC-contentmethod
836839.2thermal denaturation, midpoint method (Tm)
3259839-41

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.937no
gram-positiveno97.068yes
anaerobicno99.326no
aerobicyes88.461yes
halophileno71.96no
spore-formingno94.992yes
glucose-utilyes90.015yes
flagellatedno93.804yes
thermophileno99.615no
glucose-fermentno87.68no

External links

@ref: 8368

culture collection no.: DSM 19886, KCTC 22188, KMM 3665, JCM 11734, CECT 7617

straininfo link

  • @ref: 75218
  • straininfo: 360140

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18984704Kriegella aquimaris gen. nov., sp. nov., isolated from marine environments.Nedashkovskaya OI, Suzuki M, Kim SB, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.65751-02008Bacterial Typing Techniques, Chlorophyta/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/classification/genetics/isolation & purification/physiology, Genes, rRNA, Japan, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny27553649Aurantibacter crassamenti gen. nov., sp. nov., a bacterium isolated from marine sediment.Yoon J, Kasai HArch Microbiol10.1007/s00203-016-1280-y2016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNAMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
8368Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19886)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19886
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32598Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2881128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75218Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID360140.1StrainInfo: A central database for resolving microbial strain identifiers