Strain identifier
BacDive ID: 5738
Type strain:
Species: Kriegella aquimaris
Strain history: M. Suzuki R3665 <-- O. I. Nedashkovskaya.
NCBI tax ID(s): 192904 (species)
General
@ref: 8368
BacDive-ID: 5738
DSM-Number: 19886
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Kriegella aquimaris DSM 19886 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 192904
- Matching level: species
strain history
@ref | history |
---|---|
8368 | <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 3665 |
67770 | M. Suzuki R3665 <-- O. I. Nedashkovskaya. |
doi: 10.13145/bacdive5738.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Kriegella
- species: Kriegella aquimaris
- full scientific name: Kriegella aquimaris Nedashkovskaya et al. 2008
@ref: 8368
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Kriegella
species: Kriegella aquimaris
full scientific name: Kriegella aquimaris Nedashkovskaya et al. 2008
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
32598 | negative | 1.2-1.4 µm | 0.4-0.5 µm | rod-shaped | yes | gliding | |
69480 | negative | 99.934 |
pigmentation
- @ref: 32598
- production: yes
Culture and growth conditions
culture medium
- @ref: 8368
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8368 | positive | growth | 28 | mesophilic |
32598 | positive | growth | 04-37 | |
32598 | positive | optimum | 25-28 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
32598 | positive | growth | 7 |
32598 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 32598
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
32598 | no | |
69481 | no | 100 |
69480 | no | 99.948 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32598 | NaCl | positive | growth | 01-06 % |
32598 | NaCl | positive | optimum | 01-02 % |
observation
@ref | observation |
---|---|
32598 | aggregates in chains |
67770 | quinones: MK-6 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32598 | 22599 | arabinose | + | carbon source |
32598 | 17057 | cellobiose | + | carbon source |
32598 | 33984 | fucose | + | carbon source |
32598 | 28260 | galactose | + | carbon source |
32598 | 17234 | glucose | + | carbon source |
32598 | 17716 | lactose | + | carbon source |
32598 | 17306 | maltose | + | carbon source |
32598 | 28053 | melibiose | + | carbon source |
32598 | 16634 | raffinose | + | carbon source |
32598 | 26546 | rhamnose | + | carbon source |
32598 | 17992 | sucrose | + | carbon source |
32598 | 18222 | xylose | + | carbon source |
32598 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 32598
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
8368 | seawater | Sea of Japan, Amursky Bay | Russia | RUS | Asia |
67770 | Seawater sample from Amursky Bay of the Sea of Japan |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_146631.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_35876;97_72267;98_97099;99_146631&stattab=map
- Last taxonomy: Kriegella aquimaris subclade
- 16S sequence: AB084262
- Sequence Identity:
- Total samples: 859
- soil counts: 44
- aquatic counts: 643
- animal counts: 165
- plant counts: 7
Safety information
risk assessment
- @ref: 8368
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8368
- description: Kriegella aquimaris gene for 16S rRNA, partial sequence
- accession: AB084262
- length: 1382
- database: ena
- NCBI tax ID: 192904
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Kriegella aquimaris strain DSM 19886 | 192904.4 | wgs | patric | 192904 |
66792 | Kriegella aquimaris DSM 19886 | 2622736525 | draft | img | 192904 |
67770 | Kriegella aquimaris DSM 19886 | GCA_900103215 | scaffold | ncbi | 192904 |
GC content
@ref | GC-content | method |
---|---|---|
8368 | 39.2 | thermal denaturation, midpoint method (Tm) |
32598 | 39-41 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 86.937 | no |
gram-positive | no | 97.068 | yes |
anaerobic | no | 99.326 | no |
aerobic | yes | 88.461 | yes |
halophile | no | 71.96 | no |
spore-forming | no | 94.992 | yes |
glucose-util | yes | 90.015 | yes |
flagellated | no | 93.804 | yes |
thermophile | no | 99.615 | no |
glucose-ferment | no | 87.68 | no |
External links
@ref: 8368
culture collection no.: DSM 19886, KCTC 22188, KMM 3665, JCM 11734, CECT 7617
straininfo link
- @ref: 75218
- straininfo: 360140
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18984704 | Kriegella aquimaris gen. nov., sp. nov., isolated from marine environments. | Nedashkovskaya OI, Suzuki M, Kim SB, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijs.0.65751-0 | 2008 | Bacterial Typing Techniques, Chlorophyta/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/classification/genetics/isolation & purification/physiology, Genes, rRNA, Japan, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Genetics |
Phylogeny | 27553649 | Aurantibacter crassamenti gen. nov., sp. nov., a bacterium isolated from marine sediment. | Yoon J, Kasai H | Arch Microbiol | 10.1007/s00203-016-1280-y | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
8368 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19886) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19886 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
32598 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28811 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
75218 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID360140.1 | StrainInfo: A central database for resolving microbial strain identifiers |