Strain identifier

BacDive ID: 5696

Type strain: Yes

Species: Chryseobacterium hominis

Strain Designation: NF802

Strain history: CIP <- 2006, G. Wauters, Leuven Univ., Brussels, Belgium: strain NF802

NCBI tax ID(s): 420404 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16195

BacDive-ID: 5696

DSM-Number: 22165

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium hominis NF802 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from blood of a Belgian patient .

NCBI tax id

  • NCBI tax id: 420404
  • Matching level: species

strain history

@refhistory
375472006, G. Wauters, Louvain Univ., Bruxelles, Belgium: strain NF802
16195<- CCUG <- G.Wauters, UCL, Brussels, Belgium
119944CIP <- 2006, G. Wauters, Leuven Univ., Brussels, Belgium: strain NF802

doi: 10.13145/bacdive5696.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium hominis
  • full scientific name: Chryseobacterium hominis Vaneechoutte et al. 2007

  • synonyms

    @refsynonym
    20215Chryseobacterium arothri
    20215Epilithonimonas hominis

@ref: 16195

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium hominis

full scientific name: Chryseobacterium hominis Vaneechoutte et al. 2007

strain designation: NF802

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32225negative2 µm1.25 µmrod-shapedno
69480negative99.992
119944negativerod-shapedno

pigmentation

  • @ref: 32225
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16195NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37547MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119944CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16195positivegrowth28mesophilic
32225positivegrowth20-37
32225positiveoptimum30mesophilic
37547positivegrowth30mesophilic
59645positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32225aerobe
59645aerobe
119944obligate aerobe

antibiogram

  • @ref: 16195
  • medium: Mueller-Hinton Agar
  • Penicillin G: 10
  • oxacillin: 0
  • ampicillin: 8
  • ticarcillin: 20
  • mezlocillin: 30
  • cefalotin: 10
  • cefazolin: 10
  • cefotaxime: 28-30
  • aztreonam: 8
  • imipenem: 6
  • tetracycline: 32-34
  • chloramphenicol: 20-22
  • gentamycin: 10
  • amikacin: 10
  • vancomycin: 28-30
  • erythromycin: 24
  • lincomycin: 40
  • ofloxacin: 12
  • norfloxacin: 0
  • colistin: 6-8
  • pipemidic acid: 0
  • nitrofurantoin: 44
  • bacitracin: 14
  • polymyxin b: 12-14
  • kanamycin: 28-30
  • neomycin: 12
  • doxycycline: 42
  • ceftriaxone: 28
  • clindamycin: 50
  • fosfomycin: 0
  • moxifloxacin: 24-26
  • linezolid: 26-28
  • nystatin: 0
  • quinupristin/dalfopristin: 16-18
  • teicoplanin: 20-22
  • piperacillin/tazobactam: 38

spore formation

@refspore formationconfidence
69481no100
69480no99.985

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3222517057cellobiose+carbon source
3222517234glucose+carbon source
3222517306maltose+carbon source
3222517992sucrose+carbon source
322254853esculin+hydrolysis
3222517632nitrate+reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11994417632nitrate-reduction
11994416301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
3222535581indoleyes
11994435581indoleyes

metabolite tests

  • @ref: 32225
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
32225alkaline phosphatase+3.1.3.1
32225catalase+1.11.1.6
32225gelatinase+
32225cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119944oxidase+
119944catalase+1.11.1.6
119944urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119944-+++++++++++-+++----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119944----------+-+---------+-+/--+/-+-------++-+----------

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation date
16195blood of a Belgian patient (48-year-old woman)
59645Human blood,48-yr-old woman1998-05-21La LouvièreBelgiumBELEurope
119944Human, BloodLa LouvièreBelgiumBELEurope1998

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Female
#Host Body Product#Fluids#Blood

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
161952Risk group (German classification)
1199441Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16195
  • description: Chryseobacterium hominis partial 16S rRNA gene, type strain NF802T
  • accession: AM261868
  • length: 1483
  • database: ena
  • NCBI tax ID: 420404

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Epilithonimonas hominis DSM 22165GCA_003730015contigncbi420404
66792Chryseobacterium hominis strain DSM 22165420404.10wgspatric420404
66792Chryseobacterium hominis DSM 221652874339030draftimg420404

GC content

@refGC-contentmethod
1619536.5high performance liquid chromatography (HPLC)
3222536.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.331no
anaerobicno99.277yes
halophileno95.119no
spore-formingno96.677no
glucose-utilyes80.172yes
aerobicyes84.273no
flagellatedno95.674yes
thermophileno99.518yes
motileno92.033yes
glucose-fermentno93.415no

External links

@ref: 16195

culture collection no.: DSM 22165, CCUG 52711, CIP 109415

straininfo link

  • @ref: 75178
  • straininfo: 319366

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17978230Chryseobacterium hominis sp. nov., to accommodate clinical isolates biochemically similar to CDC groups II-h and II-c.Vaneechoutte M, Kampfer P, De Baere T, Avesani V, Janssens M, Wauters GInt J Syst Evol Microbiol10.1099/ijs.0.65158-02007Bacterial Typing Techniques, Centers for Disease Control and Prevention, U.S., Chryseobacterium/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae Infections/*microbiology, Genes, rRNA, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, RNA, Transfer/genetics, Sequence Analysis, DNA, United StatesPathogenicity
Phylogeny19329590Chryseobacterium arothri Campbell et al. 2008 is a later heterotypic synonym of Chryseobacterium hominis Vaneechoutte et al. 2007.Kampfer P, Vaneechoutte M, Wauters GInt J Syst Evol Microbiol10.1099/ijs.0.004093-02009Bacterial Typing Techniques, Chryseobacterium/chemistry/*classification/genetics/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16195Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22165
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32225Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2846728776041
37547Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7154
59645Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52711)https://www.ccug.se/strain?id=52711
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75178Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319366.1StrainInfo: A central database for resolving microbial strain identifiers
119944Curators of the CIPCollection of Institut Pasteur (CIP 109415)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109415