Strain identifier

BacDive ID: 5632

Type strain: Yes

Species: Riemerella anatipestifera

Strain history: CIP <- 1982, NCTC, Moraxella anatipestifer <- 1972, ATCC <- D.W. Bruner: strain A350/72, Pasteurella anatipestifer

NCBI tax ID(s): 693978 (strain), 34085 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6130

BacDive-ID: 5632

DSM-Number: 15868

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Riemerella anatipestifera DSM 15868 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from duck blood.

NCBI tax id

NCBI tax idMatching level
34085species
693978strain

strain history

@refhistory
6130<- LMG <- CCUG <- N. Hagen <- ATCC <- D. W. Bruner
67770LMG 11054 <-- CCUG 14215 <-- H. Hagen <-- ATCC 11845 <-- D. Bruner.
116374CIP <- 1982, NCTC, Moraxella anatipestifer <- 1972, ATCC <- D.W. Bruner: strain A350/72, Pasteurella anatipestifer

doi: 10.13145/bacdive5632.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Riemerella
  • species: Riemerella anatipestifera
  • full scientific name: Riemerella anatipestifera corrig. (Hendrickson and Hilbert 1932) Segers et al. 1993

  • synonyms

    @refsynonym
    20215Pfeifferella anatipestifer
    20215Moraxella anatipestifer
    20215Riemerella anatipestifer
    20215Moraxella anatipestifera

@ref: 6130

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Riemerella

species: Riemerella anatipestifer

full scientific name: Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 emend. Rubbenstroth et al. 2013

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.992
116374negativerod-shapedno

colony morphology

  • @ref: 6130
  • type of hemolysis: gamma
  • incubation period: 1-2 days

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_15868_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6130COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38586MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
6130TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
116374CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
116374CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6130positivegrowth37mesophilic
38586positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6130microaerophile
6130aerobe
116374obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11637417632nitrate-reduction
11637416301nitrite-reduction
6837717992sucrose-builds acid from
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11637435581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
6130catalase+1.11.1.6
6130cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
116374oxidase+
116374catalase+1.11.1.6
116374urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116374-+++++++++++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
6130+/-----++/-+--+-
6130+-+--+++--+--
6130------+++--+-
6130+/-----++/-+--+-
6130-+-+--+++--+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116374---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6130duck bloodUSAUSANorth America
67770Duck bloodUSAUSANorth America
116374Animal, DuckUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_2504.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_1349;97_1602;98_1948;99_2504&stattab=map
  • Last taxonomy: Riemerella anatipestifer subclade
  • 16S sequence: U60101
  • Sequence Identity:
  • Total samples: 3166
  • soil counts: 166
  • aquatic counts: 1329
  • animal counts: 1525
  • plant counts: 146

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
6130yes2Risk group (German classification)
1163741Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218UNVERIFIED: Riemerella anatipestifer ATCC 11845 = DSM 15868 16S ribosomal RNA gene, complete sequenceU108771504ena693978
6130Riemerella anatipestifer strain ATCC 11845 16S ribosomal RNA gene, complete sequenceU601011386ena693978

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Riemerella anatipestifer NCTC11014GCA_900186945completencbi34085
66792Riemerella anatipestifer ATCC 11845 = DSM 15868GCA_000252855completencbi693978
66792Riemerella anatipestifer ATCC 11845 = DSM 15868GCA_000183155completencbi693978
66792Riemerella anatipestifer ATCC 11845 = DSM 15868693978.17completepatric693978
66792Riemerella anatipestifer ATCC 11845 = DSM 15868693978.3completepatric693978
66792Riemerella anatipestifer strain NCTC1101434085.190completepatric34085
66792Riemerella anatipestifer A350/72, DSM 15868649633092completeimg693978
66792Riemerella anatipestifer A350/72, DSM 158682512564079completeimg693978
66792Riemerella anatipestifer NCTC 110142834954086completeimg34085

GC content

  • @ref: 6130
  • GC-content: 35

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.725no
flagellatedno95.776no
gram-positiveno98.609no
anaerobicno98.527no
aerobicno73.979no
halophileno85.015no
spore-formingno96.959no
glucose-utilyes71.071no
thermophileno98.896yes
glucose-fermentno87.147no

External links

@ref: 6130

culture collection no.: DSM 15868, ATCC 11845, CCUG 14215, JCM 9532, LMG 11054, MCCM 00568, NCTC 11014, CCUG 21370, CIP 82.28, KCTC 2911, LMG 11606

straininfo link

  • @ref: 75115
  • straininfo: 7778

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology10418875Molecular fingerprinting of Riemerella anatipestifer by repetitive sequence PCR.Huang B, Subramaniam S, Chua KL, Kwang J, Loh H, Frey J, Tan HMVet Microbiol10.1016/s0378-1135(99)00032-21999Animals, DNA Fingerprinting/*veterinary, DNA Primers/chemistry, DNA, Bacterial/chemistry, *Ducks, Electrophoresis, Agar Gel/veterinary, Gram-Negative Bacteria/chemistry/classification/*genetics, Gram-Negative Bacterial Infections/genetics/*veterinary, Polymerase Chain Reaction/veterinary, Polymorphism, Genetic/genetics, Poultry Diseases/*microbiology, Repetitive Sequences, Nucleic Acid/geneticsGenetics
Genetics12220809Development of an ELISA using a recombinant 41 kDa partial protein (P45N') for the detection of Riemerella anatipestifer infections in ducks.Huang B, Kwang J, Loh H, Frey J, Tan HM, Chua KLVet Microbiol10.1016/s0378-1135(02)00123-22002Animals, Antibodies, Bacterial/blood, *Bacterial Outer Membrane Proteins, Base Sequence, Blotting, Western/veterinary, *Ducks, Enzyme-Linked Immunosorbent Assay/methods/*veterinary, Escherichia coli/genetics, Flavobacterium/genetics/*isolation & purification, Gram-Negative Bacterial Infections/diagnosis/microbiology/*veterinary, Molecular Sequence Data, Polymerase Chain Reaction/veterinary, Poultry Diseases/diagnosis/*microbiology, Recombinant Proteins/genetics, Sensitivity and Specificity, Sepsis/diagnosis/microbiology/veterinary, Sequence Analysis, DNA, Specific Pathogen-Free OrganismsTranscriptome
Pathogenicity18483963Phenotypic characteristics of Riemerella anatipestifer and similar micro-organisms from various hosts.Hinz KH, Ryll M, Kohler B, Glunder GAvian Pathol10.1080/030794598084192721998
Genetics21677851Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Detter JC, Brambilla EM, Rohde M, Goker M, Gronow S, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NCStand Genomic Sci10.4056/sigs.15538622011
Genetics22628503Complete genome sequence of Riemerella anatipestifer reference strain.Wang X, Zhu D, Wang M, Cheng A, Jia R, Zhou Y, Chen Z, Luo Q, Liu F, Wang Y, Chen XYJ Bacteriol10.1128/JB.00366-122012Animals, Bird Diseases/microbiology, DNA, Bacterial/*chemistry/*genetics, Ducks, *Genome, Bacterial, Molecular Sequence Data, Riemerella/*genetics/isolation & purification, Sequence Analysis, DNA, Serositis/microbiology/veterinaryTranscriptome
Pathogenicity23687151Quantitative real-time PCR study of the expression and regulation of the tetracycline resistance gene in Riemerella anatipestifer.Zhong CY, Cheng AC, Wang MS, Zhu DK, Luo QH, Chen S, Zhang SH, Chen XYPoult Sci10.3382/ps.2012-026722013Anti-Bacterial Agents/pharmacology, Gene Expression Regulation, Bacterial/*physiology, Microbial Sensitivity Tests, Real-Time Polymerase Chain Reaction/*methods, Riemerella/*drug effects/genetics/*metabolism, Sensitivity and Specificity, Tetracycline/*pharmacology, Tetracycline Resistance/*geneticsMetabolism
Metabolism24345412The siderophore-interacting protein is involved in iron acquisition and virulence of Riemerella anatipestifer strain CH3.Tu J, Lu F, Miao S, Ni X, Jiang P, Yu H, Xing L, Yu S, Ding C, Hu QVet Microbiol10.1016/j.vetmic.2013.11.0272013Animals, Bacterial Proteins/genetics/*metabolism, Chlorocebus aethiops, Ducks, Flavobacteriaceae Infections/metabolism/*microbiology/veterinary, Gene Deletion, Iron/*metabolism, Mutant Proteins/genetics/metabolism, Poultry, Poultry Diseases/metabolism/*microbiology, Riemerella/classification/*metabolism/pathogenicity, Siderophores/genetics/*metabolism, Vero Cells, Virulence/physiologyPhylogeny
Genetics24935762Comparative genomics of Riemerella anatipestifer reveals genetic diversity.Wang X, Liu W, Zhu D, Yang L, Liu M, Yin S, Wang M, Jia R, Chen S, Sun K, Cheng A, Chen XBMC Genomics10.1186/1471-2164-15-4792014Base Composition, Chromosome Mapping, Codon, *Genome, Bacterial, INDEL Mutation, Multigene Family, Phylogeny, Polymorphism, Single Nucleotide, Riemerella/*genetics, Sequence Analysis, DNAPhylogeny
Genetics26002892Whole-Genome Sequence Analysis and Genome-Wide Virulence Gene Identification of Riemerella anatipestifer Strain Yb2.Wang X, Ding C, Wang S, Han X, Yu SAppl Environ Microbiol10.1128/AEM.00828-152015Animals, Anseriformes/microbiology, Base Composition, Chromosomes, Bacterial, Cluster Analysis, DNA Transposable Elements, DNA, Bacterial/*chemistry/*genetics, Gene Order, *Genome, Bacterial, Molecular Sequence Data, Mutagenesis, Insertional, Open Reading Frames, Phylogeny, Riemerella/*genetics/isolation & purification, *Sequence Analysis, DNA, Synteny, Virulence, Virulence Factors/*geneticsTranscriptome
Enzymology26107936ErmF and ereD are responsible for erythromycin resistance in Riemerella anatipestifer.Xing L, Yu H, Qi J, Jiang P, Sun B, Cui J, Ou C, Chang W, Hu QPLoS One10.1371/journal.pone.01310782015Animals, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, Drug Resistance, Bacterial/*genetics, Drug Resistance, Microbial/*genetics, Ducks, Erythromycin/*pharmacology, Escherichia coli, Genes, Bacterial, Methyltransferases/*genetics, Riemerella/drug effects/*genetics/isolation & purificationPhylogeny
Metabolism27845444Investigation of TbfA in Riemerella anatipestifer using plasmid-based methods for gene over-expression and knockdown.Liu M, Wang M, Zhu D, Wang M, Jia R, Chen S, Sun K, Yang Q, Wu Y, Chen X, Biville F, Cheng ASci Rep10.1038/srep371592016*Bacterial Proteins/genetics/metabolism, *Carrier Proteins/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Knockdown Techniques, Hemin/genetics/*metabolism, Plasmids/genetics, *Riemerella/genetics/metabolism
28258143Use of Natural Transformation To Establish an Easy Knockout Method in Riemerella anatipestifer.Liu M, Zhang L, Huang L, Biville F, Zhu D, Wang M, Jia R, Chen S, Sun K, Yang Q, Wu Y, Chen X, Cheng AAppl Environ Microbiol10.1128/AEM.00127-172017Gene Knockout Techniques/*methods, Genetics, Microbial/*methods, Riemerella/*genetics, *Transformation, Bacterial
Enzymology28843817A novel resistance gene, lnu(H), conferring resistance to lincosamides in Riemerella anatipestifer CH-2.Luo HY, Liu MF, Wang MS, Zhao XX, Jia RY, Chen S, Sun KF, Yang Q, Wu Y, Chen XY, Biville F, Zou YF, Jing B, Cheng AC, Zhu DKInt J Antimicrob Agents10.1016/j.ijantimicag.2017.08.0222017Animals, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, China, Clindamycin/pharmacology, Drug Resistance, Bacterial/*genetics, Ducks/microbiology, Flavobacteriaceae Infections/microbiology/*veterinary, Lincosamides/*pharmacology, Microbial Sensitivity Tests, Nucleotidyltransferases/*genetics, Plasmids/genetics, Riemerella/*drug effects/*genetics/isolation & purificationPhylogeny
29636748Various Profiles of tet Genes Addition to tet(X) in Riemerella anatipestifer Isolates From Ducks in China.Zhu DK, Luo HY, Liu MF, Zhao XX, Jia RY, Chen S, Sun KF, Yang Q, Wu Y, Chen XY, Cheng AC, Wang MSFront Microbiol10.3389/fmicb.2018.005852018
29951859Multiple genetic tools for editing the genome of Riemerella anatipestifer using a counterselectable marker.Liu M, Huang Y, Liu J, Biville F, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Chen X, Liu Y, Zhang L, You Y, Yu Y, Cheng AAppl Microbiol Biotechnol10.1007/s00253-018-9181-42018Gene Editing/*methods, Genes, Bacterial/genetics, Genetic Markers/genetics, Mutation, Plasmids/genetics, Riemerella/*genetics
Pathogenicity31122209Rifampin resistance and its fitness cost in Riemerella anatipestifer.Sun J, Zhu D, Xu J, Jia R, Chen S, Liu M, Zhao X, Yang Q, Wu Y, Zhang S, Liu Y, Zhang L, Yu Y, You Y, Wang M, Cheng ABMC Microbiol10.1186/s12866-019-1478-72019Animals, Bacterial Proteins/genetics, Brain/microbiology, DNA-Directed RNA Polymerases/*genetics, *Drug Resistance, Bacterial, Ducks, Hydrogen Peroxide/pharmacology, Microbial Sensitivity Tests, Nitroprusside/pharmacology, *Point Mutation, Riemerella/drug effects/genetics/*growth & development, Rifampin/pharmacology, Trachea/microbiology
31156696DprA Is Essential for Natural Competence in Riemerella anatipestifer and Has a Conserved Evolutionary Mechanism.Huang L, Tian X, Liu M, Wang M, Biville F, Cheng A, Zhu D, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Tian B, Yu Y, Liu Y, Zhang L, Pan L, Rehman MU, Chen XFront Genet10.3389/fgene.2019.004292019
Pathogenicity31160365New Perspectives on Galleria mellonella Larvae as a Host Model Using Riemerella anatipestifer as a Proof of Concept.Liu M, Huang M, Huang L, Biville F, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Tian B, Chen X, Liu Y, Zhang L, Yu Y, Pan L, Ur Rehman M, Cheng AInfect Immun10.1128/IAI.00072-192019Animals, Ducks, Flavobacteriaceae Infections, Heme/metabolism, Host-Pathogen Interactions, Larva/microbiology, Lepidoptera/*microbiology, *Riemerella/drug effects/growth & developmentMetabolism
Genetics31181133Development of a markerless gene deletion strategy using rpsL as a counterselectable marker and characterization of the function of RA0C_1534 in Riemerella anatipestifer ATCC11845 using this strategy.Liu M, Tian X, Wang M, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Tian B, Chen X, Liu Y, Zhang L, Yu Y, Biville F, Pan L, Rehman MU, Cheng APLoS One10.1371/journal.pone.02182412019Bacterial Proteins/genetics, Drug Resistance, Microbial/genetics, Escherichia coli/genetics, Escherichia coli Proteins, Gene Deletion, Genetic Engineering/*methods, Genetic Markers/genetics, Mutagenesis, Insertional/methods, Mutation, Ribosomal Protein S9, Riemerella/*genetics/*isolation & purification, Selection, Genetic/genetics, Sequence Deletion/geneticsEnzymology
31281307Role of LptD in Resistance to Glutaraldehyde and Pathogenicity in Riemerella anatipestifer.Huang L, Wang M, Mo T, Liu M, Biville F, Zhu D, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Tian B, Liu Y, Zhang L, Yu Y, Pan L, Rehman MU, Chen X, Cheng AFront Microbiol10.3389/fmicb.2019.014432019
31616389Identification of an Integrase That Responsible for Precise Integration and Excision of Riemerella anatipestifer Genomic Island.Wang Y, Zhang Y, Cui Y, Sun Z, Zhou Z, Hu S, Li S, Liu M, Meng X, Xiao Y, Shi D, Bi D, Li ZFront Microbiol10.3389/fmicb.2019.020992019
34447355Effect of Nutritional Determinants and TonB on the Natural Transformation of Riemerella anatipestifer.Zhang L, Huang L, Huang M, Wang M, Zhu D, Wang M, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Mao S, Gao Q, Tian B, Cheng A, Liu MFront Microbiol10.3389/fmicb.2021.6448682021
34566918Identification of the Natural Transformation Genes in Riemerella anatipestifer by Random Transposon Mutagenesis.Huang L, Liu M, Ammanath AV, Zhu D, Jia R, Chen S, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Ou X, Mao S, Gao Q, Sun D, Tian B, Gotz F, Wang M, Cheng AFront Microbiol10.3389/fmicb.2021.7121982021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6130Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15868)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15868
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38586Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11297
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75115Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7778.1StrainInfo: A central database for resolving microbial strain identifiers
116374Curators of the CIPCollection of Institut Pasteur (CIP 82.28)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.28