Strain identifier

BacDive ID: 5580

Type strain: Yes

Species: Flavobacterium haoranii

Strain Designation: LQY-7

Strain history: CIP <- 2012, KCTC <- strain LQY-7

NCBI tax ID(s): 683124 (species)

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General

@ref: 16527

BacDive-ID: 5580

DSM-Number: 22807

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Flavobacterium haoranii LQY-7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from activated sludge in a synthetic pyrethroid-manufacturing wastewater treatment facility.

NCBI tax id

  • NCBI tax id: 683124
  • Matching level: species

strain history

@refhistory
16527<- J. Zhang, Nanjing Agric. Univ., China; LQY-7
67771<- J Zhang,Nanjing Agricultural Univ., China
119837CIP <- 2012, KCTC <- strain LQY-7

doi: 10.13145/bacdive5580.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium haoranii
  • full scientific name: Flavobacterium haoranii Zhang et al. 2010

@ref: 16527

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium haoranii

full scientific name: Flavobacterium haoranii Zhang et al. 2010 emend. Sheu et al. 2013

strain designation: LQY-7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29779negative1.3-2 µm0.3-0.7 µmrod-shapedno
67771rod-shapedno
67771negative
119837negativerod-shapedno
69480no95.5
69480negative98.205

pigmentation

  • @ref: 29779
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16527TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
42250MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119837CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
16527positivegrowth28
29779positivegrowth15-37
29779positiveoptimum30
42250positivegrowth30
67771positivegrowth30

culture pH

@refabilitytypepH
29779positivegrowth06-08
29779positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29779aerobe
67771aerobe

spore formation

@refspore formationconfidence
29779no
67771no
69480no94.81
69481no100

halophily

@refsaltgrowthtested relationconcentration
29779NaClpositivegrowth0-5 %
29779NaClpositiveoptimum1 %

observation

@refobservation
29779aggregates in chains
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
297794853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

enzymes

@refvalueactivityec
29779catalase+1.11.1.6
29779cytochrome oxidase+1.9.3.1
29779urease+3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119837--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119837-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16527activated sludge in a synthetic pyrethroid-manufacturing wastewater treatment facilityJiangsu Province, Yangzhou, Yangnong Chemical Group Co.ChinaCHNAsia
67771From activated sludge, wastewater-treating systemChinaCHNAsia
119837Environment, Activated sludge wastewater-treating systemChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Engineered#Waste#Activated sludge
#Engineered#Waste#Industrial wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_8017.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_3706;97_4554;98_5844;99_8017&stattab=map
  • Last taxonomy: Flavobacterium haoranii subclade
  • 16S sequence: GQ988780
  • Sequence Identity:
  • Total samples: 1828
  • soil counts: 92
  • aquatic counts: 1148
  • animal counts: 568
  • plant counts: 20

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165271Risk group (German classification)
1198371Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16527
  • description: Flavobacterium haoranii strain LQY-7 16S ribosomal RNA gene, partial sequence
  • accession: GQ988780
  • length: 1438
  • database: nuccore
  • NCBI tax ID: 683124

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium haoranii DSM 22807GCA_900142055scaffoldncbi683124
66792Flavobacterium haoranii KCTC 23008GCA_009363055completencbi683124
66792Flavobacterium haoranii strain DSM 22807683124.3wgspatric683124
66792Flavobacterium haoranii strain KCTC 23008683124.6completepatric683124
66792Flavobacterium haoranii DSM 228072695421039draftimg683124

GC content

@refGC-contentmethod
1652734thermal denaturation, midpoint method (Tm)
2977934
6777134.0

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.205yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.905no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.011yes
69480spore-formingspore-formingAbility to form endo- or exosporesno94.81yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.185no
69480flagellatedmotile2+Ability to perform flagellated movementno95.5yes

External links

@ref: 16527

culture collection no.: DSM 22807, ACCC 05409, KCTC 23008, CIP 110398

straininfo link

  • @ref: 75062
  • straininfo: 374230

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20081015Flavobacterium haoranii sp. nov., a cypermethrin-degrading bacterium isolated from a wastewater treatment system.Zhang J, Jiang RB, Zhang XX, Hang BJ, He J, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.020776-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Pigmentation, Pyrethrins/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Waste WaterGenetics
Phylogeny22904217Flavobacterium fontis sp. nov., isolated from freshwater.Chun J, Kang JY, Jahng KYInt J Syst Evol Microbiol10.1099/ijs.0.045203-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/analysis, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny23148098Flavobacterium squillarum sp. nov., isolated from a freshwater shrimp culture pond, and emended descriptions of Flavobacterium haoranii, Flavobacterium cauense, Flavobacterium terrae and Flavobacterium aquatile.Sheu SY, Lin YS, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.046425-02012Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Decapoda, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/analysis, Water MicrobiologyGenetics
Phylogeny26502959Flavobacterium jejuensis sp. nov., isolated from marine brown alga Ecklonia cava.Park SH, Kim JY, Kim YJ, Heo MSJ Microbiol10.1007/s12275-015-5280-42015Bacterial Typing Techniques, Base Composition, Fatty Acids/chemistry, Flavobacterium/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phaeophyta/*microbiology, Phosphatidylethanolamines/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water MicrobiologyGenetics
Phylogeny27902260Flavobacterium luticocti sp. nov., isolated from wastewater.Liu H, Lu P, Jin L, Zhu GInt J Syst Evol Microbiol10.1099/ijsem.0.0016342017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Waste Water/*microbiologyTranscriptome
Phylogeny30355396Flavobacterium sediminis sp. nov., a starch-degrading bacterium isolated from tidal flat sediment.Bae SS, Kim MR, Jung Y, Yang SH, Kwon KK, Baek KInt J Syst Evol Microbiol10.1099/ijsem.0.0030812018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16527Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22807)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22807
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29779Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2615928776041
42250Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8253
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75062Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID374230.1StrainInfo: A central database for resolving microbial strain identifiers
119837Curators of the CIPCollection of Institut Pasteur (CIP 110398)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110398