Strain identifier
BacDive ID: 5472
Type strain: 
Species: Marinoscillum furvescens
Strain Designation: TV-2
Strain history: <- NCMB <- R.A. Lewin, TV-2 ("Microscilla furvescens")
NCBI tax ID(s): 1122208 (strain), 1026 (species)
version 9.1 (current version)
General
@ref: 1597
BacDive-ID: 5472
DSM-Number: 4134
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Marinoscillum furvescens TV-2 is a Gram-negative bacterium that was isolated from brown sand.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122208 | strain |
| 1026 | species |
strain history
- @ref: 1597
- history: <- NCMB <- R.A. Lewin, TV-2 ("Microscilla furvescens")
doi: 10.13145/bacdive5472.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Reichenbachiellaceae
- genus: Marinoscillum
- species: Marinoscillum furvescens
- full scientific name: Marinoscillum furvescens (ex Lewin 1969) Seo et al. 2009
@ref: 1597
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Reichenbachiellaceae
genus: Marinoscillum
species: Marinoscillum furvescens
full scientific name: Marinoscillum furvescens (ex Lewin 1969) Seo et al. 2009
strain designation: TV-2
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.485
Culture and growth conditions
culture medium
- @ref: 1597
- name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)
- growth: yes
- link: https://mediadive.dsmz.de/medium/172
- composition: Name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) Composition: NaCl 24.7 g/l Agar 15.0 g/l MgSO4 x 7 H2O 6.3 g/l MgCl2 x 6 H2O 4.6 g/l CaCl2 x 2 H2O 1.2 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KCl 0.7 g/l NaHCO3 0.2 g/l Distilled water
culture temp
- @ref: 1597
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 1597
- sample type: brown sand
- country: Samoa
- origin.country: WSM
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Sandy
taxonmaps
- @ref: 69479
- File name: preview.99_135076.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15905;96_29314;97_36956;98_47822;99_135076&stattab=map
- Last taxonomy: Marinoscillum furvescens subclade
- 16S sequence: AB078079
- Sequence Identity:
- Total samples: 1247
- soil counts: 168
- aquatic counts: 824
- animal counts: 231
- plant counts: 24
Safety information
risk assessment
- @ref: 1597
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1597
- description: Marinoscillum furvescens gene for 16S rRNA, strain: NBRC 15994 (= IFO 15994)
- accession: AB078079
- length: 1474
- database: nuccore
- NCBI tax ID: 1026
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinoscillum furvescens DSM 4134 | GCA_003386095 | scaffold | ncbi | 1122208 |
| 66792 | Marinoscillum furvescens DSM 4134 | 1122208.3 | wgs | patric | 1122208 |
| 66792 | Marinoscillum furvescens DSM 4134 | 2754412942 | draft | img | 1026 |
GC content
- @ref: 1597
- GC-content: 44.9
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.485 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.552 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.48 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.882 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.502 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 86.595 | no |
External links
@ref: 1597
culture collection no.: DSM 4134, ATCC 23129, NCMB 1419
straininfo link
- @ref: 74960
- straininfo: 10156
literature
- topic: Phylogeny
- Pubmed-ID: 19406820
- title: Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.
- authors: Seo HS, Kwon KK, Yang SH, Lee HS, Bae SS, Lee JH, Kim SJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.004317-0
- year: 2009
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis/isolation & purification, DNA, Ribosomal/analysis, Fatty Acids/analysis, Marine Biology, Micronesia, Molecular Sequence Data, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1597 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4134) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4134 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 74960 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID10156.1 | StrainInfo: A central database for resolving microbial strain identifiers |