Strain identifier
BacDive ID: 5460
Type strain: 
Species: Acidiplasma cupricumulans
Strain Designation: BH2
Strain history: J. J. Plumb BH2.
NCBI tax ID(s): 1295373 (strain), 312540 (species)
version 8.1 (current version)
General
@ref: 6551
BacDive-ID: 5460
DSM-Number: 16651
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Acidiplasma cupricumulans BH2 is a thermophilic archaeon that was isolated from mineral sulfide ore, Monywa Minesite.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 312540 | species |
| 1295373 | strain |
strain history
| @ref | history |
|---|---|
| 6551 | <- J. J. Plumb, CSIRO Land and Water, Wembley, WA, Australia; BH2 <- R. B. Hawkes {2003} |
| 67770 | J. J. Plumb BH2. |
doi: 10.13145/bacdive5460.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermoplasmata
- order: Thermoplasmatales
- family: Ferroplasmataceae
- genus: Acidiplasma
- species: Acidiplasma cupricumulans
- full scientific name: Acidiplasma cupricumulans (Hawkes et al. 2008) Golyshina et al. 2009
synonyms
- @ref: 20215
- synonym: Ferroplasma cupricumulans
@ref: 6551
domain: Archaea
phylum: Euryarchaeota
class: Thermoplasmata
order: Thermoplasmatales
family: Ferroplasmaceae
genus: Acidiplasma
species: Acidiplasma cupricumulans
full scientific name: Acidiplasma cupricumulans (Hawkes et al. 2008) Golyshina et al. 2009
strain designation: BH2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6551
- name: FERROPLASMA ACIDIPHILUM MEDIUM (DSMZ Medium 874)
- growth: yes
- link: https://mediadive.dsmz.de/medium/874
- composition: Name: FERROPLASMA ACIDIPHILUM MEDIUM (DSMZ Medium 874; with strain-specific modifications) Composition: FeSO4 x 7 H2O 25.0 g/l Potassium tetrathionate 2.0 g/l MgSO4 x 7 H2O 0.4 g/l (NH4)2SO4 0.2 g/l Yeast extract 0.2 g/l K2HPO4 0.1 g/l KCl 0.1 g/l FeCl3 x 6 H2O 0.0193 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l VOSO4 x 5 H2O 3.8e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 2e-05 g/l H2SO4 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6551 | positive | growth | 55 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6551 | mineral sulfide ore, Monywa Minesite | Monywa | Myanmar | MMR | Asia |
| 67770 | Industrial mineral sulphide bioleach heap in Myanmar |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Terrestrial |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_187657.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17825;96_68839;97_89484;98_122136;99_187657&stattab=map
- Last taxonomy: Ferroplasmaceae
- 16S sequence: AY907888
- Sequence Identity:
- Total samples: 25
- soil counts: 1
- aquatic counts: 23
- animal counts: 1
Safety information
risk assessment
- @ref: 6551
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6551
- description: Ferroplasma cupricumulans strain BH2 16S ribosomal RNA gene, partial sequence
- accession: AY907888
- length: 1445
- database: ena
- NCBI tax ID: 312540
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidiplasma cupricumulans JCM 13668 | 2681813016 | draft | img | 1295373 |
| 66792 | Acidiplasma cupricumulans BH2 | 2654587522 | draft | img | 312540 |
| 67770 | Acidiplasma cupricumulans JCM 13668 | GCA_001316225 | contig | ncbi | 1295373 |
| 67770 | Acidiplasma cupricumulans BH2 | GCA_001402935 | contig | ncbi | 312540 |
| 66792 | Acidiplasma cupricumulans JCM 13668 | 1295373.3 | wgs | patric | 1295373 |
GC content
| @ref | GC-content |
|---|---|
| 6551 | 34.0 |
| 67770 | 34 |
External links
@ref: 6551
culture collection no.: DSM 16651, JCM 13668
straininfo link
- @ref: 74948
- straininfo: 297629
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16721487 | Ferroplasma cupricumulans sp. nov., a novel moderately thermophilic, acidophilic archaeon isolated from an industrial-scale chalcocite bioleach heap. | Hawkes RB, Franzmann PD, O'Hara G, Plumb JJ | Extremophiles | 10.1007/s00792-006-0527-y | 2006 | Biodegradation, Environmental, *Copper, DNA, Archaeal/analysis, *Environmental Restoration and Remediation, Ferric Compounds/metabolism, Ferrous Compounds/metabolism, Hydrogen-Ion Concentration, Industrial Waste/*analysis, Kinetics, *Metallurgy, Myanmar, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Homology, Nucleic Acid, Temperature, Thermoplasma/*classification/genetics/growth & development/isolation & purification/metabolism | Metabolism |
| Phylogeny | 19628615 | Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov. | Golyshina OV, Yakimov MM, Lunsdorf H, Ferrer M, Nimtz M, Timmis KN, Wray V, Tindall BJ, Golyshin PN | Int J Syst Evol Microbiol | 10.1099/ijs.0.009639-0 | 2009 | DNA, Archaeal/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Thermoplasmales/*classification/genetics/*isolation & purification, *Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6551 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16651) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16651 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74948 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297629.1 | StrainInfo: A central database for resolving microbial strain identifiers |