Strain identifier
BacDive ID: 5450
Type strain: 
Species: Eubacterium minutum
Strain Designation: M-6
Strain history: CIP <- 1996, E. Hoshino, Niigata Univ., Niigata, Japan: strain M-6
NCBI tax ID(s): 888721 (strain), 76124 (species)
version 8.1 (current version)
General
@ref: 7606
BacDive-ID: 5450
DSM-Number: 18759
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Eubacterium minutum M-6 is an anaerobe, mesophilic bacterium that was isolated from human, peridontal pocket.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 888721 | strain |
| 76124 | species |
strain history
| @ref | history |
|---|---|
| 7606 | <- CIP <- E. Hoshino |
| 120965 | CIP <- 1996, E. Hoshino, Niigata Univ., Niigata, Japan: strain M-6 |
doi: 10.13145/bacdive5450.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Eubacterium
- species: Eubacterium minutum
- full scientific name: Eubacterium minutum Poco et al. 1996
synonyms
- @ref: 20215
- synonym: Eubacterium tardum
@ref: 7606
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Eubacterium
species: Eubacterium minutum
full scientific name: Eubacterium minutum Poco et al. 1996 emend. Wade et al. 1999
strain designation: M-6
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 7606 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
| 41305 | MEDIUM 187 - for anaerobic bacteria | yes | Distilled water make up to (1000.000 ml);Glucose (5.000 g);Yeast extract(20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);Hemin solution - M00149(25.000 ml) | |
| 120965 | CIP Medium 187 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=187 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7606 | positive | growth | 37 | mesophilic |
| 41305 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7606
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|
| 7606 | human, peridontal pocket | Japan | JPN | Asia | |
| 120965 | Human, Periodontal pockets | Japan | JPN | Asia | 1985 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Periodontal pocket |
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 7606 | 2 | Risk group (German classification) |
| 120965 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Eubacterium minutum DNA for 16S rRNA, strain ATCC 700079 | AB020885 | 1457 | ena | 888721 |
| 7606 | Eubacterium minutum 16S rRNA gene, strain ATCC 700079 | AJ005636 | 1440 | ena | 888721 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Eubacterium minutum ATCC 700079 | GCA_003433295 | chromosome | ncbi | 888721 |
| 66792 | Eubacterium minutum ATCC 700079 | 888721.3 | wgs | patric | 888721 |
| 66792 | Eubacterium minutum ATCC 700079 | 2833857752 | complete | img | 888721 |
GC content
- @ref: 7606
- GC-content: 38-40
External links
@ref: 7606
culture collection no.: DSM 18759, ATCC 700079, CIP 104795, KCTC 15027
straininfo link
- @ref: 74938
- straininfo: 43759
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7606 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18759) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18759 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 41305 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16742 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 74938 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43759.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 120965 | Curators of the CIP | Collection of Institut Pasteur (CIP 104795) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104795 |