Strain identifier
BacDive ID: 5449
Type strain: 
Species: Eubacterium aggregans
Strain Designation: SR12
Strain history: <- J.-L. Garcia; SR12
NCBI tax ID(s): 81409 (species)
version 8.1 (current version)
General
@ref: 4636
BacDive-ID: 5449
DSM-Number: 12183
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Eubacterium aggregans SR12 is an anaerobe, mesophilic bacterium that was isolated from anaerobic digester fed with olive mill wastewater.
NCBI tax id
- NCBI tax id: 81409
- Matching level: species
strain history
- @ref: 4636
- history: <- J.-L. Garcia; SR12
doi: 10.13145/bacdive5449.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Eubacterium
- species: Eubacterium aggregans
- full scientific name: Eubacterium aggregans Mechichi et al. 2000
@ref: 4636
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Eubacterium
species: Eubacterium aggregans
full scientific name: Eubacterium aggregans Mechichi et al. 2000
strain designation: SR12
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4636
- name: EUBACTERIUM AGGREGANS MEDIUM (DSMZ Medium 711a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/711a
- composition: Name: EUBACTERIUM AGGREGANS MEDIUM (DSMZ Medium 711a) Composition: Fructose 4.98504 g/l Na2CO3 1.49551 g/l trans-3,4,5-trimethoxycinnamate 1.18644 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l NaCl 0.598205 g/l Na2S x 9 H2O 0.299103 g/l K2HPO4 0.299103 g/l KH2PO4 0.299103 g/l L-Cysteine HCl x H2O 0.299103 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0997009 g/l KCl 0.0997009 g/l HCl 0.00373878 g/l FeCl2 x 4 H2O 0.00224327 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000284148 g/l MnCl2 x 4 H2O 0.000149551 g/l ZnCl2 0.000104686 g/l Pyridoxine hydrochloride 9.97009e-05 g/l Na2MoO4 x 2 H2O 5.38385e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l NiCl2 x 6 H2O 3.58923e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 8.97308e-06 g/l CuCl2 x 2 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 4636
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4636
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4636
- sample type: anaerobic digester fed with olive mill wastewater
- country: Tunisia
- origin.country: TUN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Industrial | |
| #Engineered | #Waste | #Industrial wastewater |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_50153.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_22638;97_28299;98_36058;99_50153&stattab=map
- Last taxonomy: Eubacterium aggregans subclade
- 16S sequence: AF073898
- Sequence Identity:
- Total samples: 1566
- soil counts: 45
- aquatic counts: 1316
- animal counts: 175
- plant counts: 30
Safety information
risk assessment
- @ref: 4636
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4636
- description: Eubacterium aggregans 16S ribosomal RNA gene, partial sequence
- accession: AF073898
- length: 1509
- database: ena
- NCBI tax ID: 81409
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Eubacterium aggregans SR12 | GCA_900107815 | contig | ncbi | 81409 |
| 66792 | Eubacterium aggregans SR12 | 2642422588 | draft | img | 81409 |
GC content
- @ref: 4636
- GC-content: 55
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4636
culture collection no.: DSM 12183
straininfo link
- @ref: 74937
- straininfo: 49247
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 |
|---|---|---|---|---|---|---|---|
| Phylogeny | 16887654 | Eubacterium aggreganssp. nov., a new homoacetogenic bacterium from olive mill wastewater treatment digestor. | Mechichi T, Labat M, Woo TH, Thomas P, Garcia JL, Patel BK | Anaerobe | 10.1006/anae.1998.0179 | 1998 | |
| Metabolism | 30285910 | Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism. | Feng Y, Stams AJM, Sanchez-Andrea I, de Vos WM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003028 | 2018 | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4636 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12183) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12183 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74937 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49247.1 | StrainInfo: A central database for resolving microbial strain identifiers |