Strain identifier

BacDive ID: 5402

Type strain: Yes

Species: Acetobacterium woodii

Culture col. no.: DSM 1030, ATCC 29683, JCM 2381, WB 1

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General

@ref: 478

BacDive-ID: 5402

DSM-Number: 1030

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Acetobacterium woodii DSM 1030 is an anaerobe, mesophilic bacterium that was isolated from mud.

strain history: <- S. Schoberth, Univ. Illinois, Urbana, USA; WB1 <- W. E. Balch

doi: 10.13145/bacdive5402.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium woodii
  • full scientific name: Acetobacterium woodii Balch et al. 1977 (Approved Lists 1980)

@ref: 478

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium woodii

full scientific name: Acetobacterium woodii Balch et al. 1977

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 478
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium135.pdf

culture temp

  • @ref: 478
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 478
  • oxygen tolerance: anaerobe

compound production

  • @ref: 478
  • compound: hydrogenase

Isolation, sampling and environmental information

isolation

  • @ref: 478
  • sample type: mud
  • geographic location: Massachusetts, Woods Hole, Oyster Pond Inlet
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

Safety information

risk assessment

  • @ref: 478
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacterium woodii strain DSM 1030 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceDQ834681391ena931626
478A.woodii 16S rRNA geneX969541475ena931626

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacterium woodii DSM 1030GCA_000247605completencbi931626
66792Acetobacterium woodii DSM 1030931626.3completepatric931626

GC content

  • @ref: 478
  • GC-content: 39.0

External links

@ref: 478

culture collection no.: DSM 1030, ATCC 29683, JCM 2381, WB 1

straininfo link

@refpassport
20218http://www.straininfo.net/strains/107164
20218http://www.straininfo.net/strains/107162
20218http://www.straininfo.net/strains/157080

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
478Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1030)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1030
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)