Strain identifier
BacDive ID: 5374
Type strain: 
Species: Turicibacter sanguinis
Strain history: <- P. P. Bosshard, Univ. Zurich, Switzerland; MOL361 <- J. Gubler {2000}
NCBI tax ID(s): 154288 (species)
version 8.1 (current version)
General
@ref: 5258
BacDive-ID: 5374
DSM-Number: 14220
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen
description: Turicibacter sanguinis DSM 14220 is an anaerobe, mesophilic human pathogen that was isolated from human blood.
NCBI tax id
- NCBI tax id: 154288
- Matching level: species
strain history
- @ref: 5258
- history: <- P. P. Bosshard, Univ. Zurich, Switzerland; MOL361 <- J. Gubler {2000}
doi: 10.13145/bacdive5374.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Turicibacteraceae
- genus: Turicibacter
- species: Turicibacter sanguinis
- full scientific name: Turicibacter sanguinis Bosshard et al. 2002
@ref: 5258
domain: Bacteria
phylum: Firmicutes
class: Erysipelotrichia
order: Erysipelotrichales
family: Turicibacteraceae
genus: Turicibacter
species: Turicibacter sanguinis
full scientific name: Turicibacter sanguinis Bosshard et al. 2002
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5258 | PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) | yes | https://mediadive.dsmz.de/medium/104c | Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 5258 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
culture temp
- @ref: 5258
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5258
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5258
- sample type: human blood
- geographic location: Zurich
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_8086.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_273;96_1085;97_1269;98_1524;99_8086&stattab=map
- Last taxonomy: Turicibacter sanguinis subclade
- 16S sequence: AF349724
- Sequence Identity:
- Total samples: 246037
- soil counts: 24834
- aquatic counts: 21393
- animal counts: 194773
- plant counts: 5037
Safety information
risk assessment
- @ref: 5258
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5258
- description: Gram-positive bacterium MOL361 16S ribosomal RNA gene, complete sequence
- accession: AF349724
- length: 1508
- database: ena
- NCBI tax ID: 154288
Genome sequences
- @ref: 66792
- description: Turicibacter sanguinis strain DSM 14220
- accession: 154288.56
- assembly level: wgs
- database: patric
- NCBI tax ID: 154288
GC content
- @ref: 5258
- GC-content: 36.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.987 | no |
| gram-positive | yes | 91.551 | no |
| anaerobic | yes | 88.661 | no |
| aerobic | no | 96.884 | no |
| halophile | no | 74.572 | no |
| spore-forming | no | 67.235 | no |
| thermophile | no | 97.643 | yes |
| glucose-util | yes | 90.787 | no |
| flagellated | no | 93.727 | no |
| glucose-ferment | yes | 74.051 | no |
External links
@ref: 5258
culture collection no.: DSM 14220, NCCB 100008, MOL 361
straininfo link
- @ref: 74864
- straininfo: 101049
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12148638 | Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium. | Bosshard PP, Zbinden R, Altwegg M | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1263 | 2002 | Anaerobiosis, Appendicitis/*microbiology, Base Composition, Blood/microbiology, Culture Media, DNA, Ribosomal, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/physiology, Gram-Positive Bacterial Infections/microbiology, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA | Cultivation |
| Genetics | 32554789 | Complete Genome Sequence and Annotation for Turicibacter sanguinis MOL361(T) (DSM 14220). | Maki JJ, Nielsen DW, Looft T | Microbiol Resour Announc | 10.1128/MRA.00475-20 | 2020 | ||
| Phylogeny | 33125314 | Culicoidibacter larvae gen. nov., sp. nov., from the gastrointestinal tract of the biting midge (Culicoides sonorensis) larva, belongs to a novel lineage Culicoidibacteraceae fam. nov., Culicoidibacterales ord. nov. and Culicoidibacteria classis nov. of the phylum Firmicutes. | Neupane S, Ghosh A, Gunther S, Martin K, Zurek L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004543 | 2020 | Animals, Bacterial Typing Techniques, Ceratopogonidae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Firmicutes/*classification/genetics, Gastrointestinal Tract/microbiology, Larva/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5258 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14220) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14220 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 74864 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101049.1 | StrainInfo: A central database for resolving microbial strain identifiers |