Strain identifier

BacDive ID: 5351

Type strain: Yes

Species: Enterococcus caccae

Strain Designation: SS-1777, SS 1777, 2215-02

Strain history: CIP <- 2006, CCUG <- 2005, P. L. Shewmaker, CDC, Atlanta, Oregon, USA <- PHLS, Oregon, USA: strain 2215-02

NCBI tax ID(s): 317735 (species)

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General

@ref: 7901

BacDive-ID: 5351

DSM-Number: 19114

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, spore-forming, mesophilic, Gram-positive, coccus-shaped

description: Enterococcus caccae SS-1777 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from human feces.

NCBI tax id

  • NCBI tax id: 317735
  • Matching level: species

strain history

@refhistory
7901<- CCUG <- P.L. Shewmaker, CDC, Atlanta <- Kevin Joyce
117088CIP <- 2006, CCUG <- 2005, P. L. Shewmaker, CDC, Atlanta, Oregon, USA <- PHLS, Oregon, USA: strain 2215-02

doi: 10.13145/bacdive5351.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus caccae
  • full scientific name: Enterococcus caccae Carvalho et al. 2006

@ref: 7901

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus caccae

full scientific name: Enterococcus caccae Carvalho et al. 2006

strain designation: SS-1777, SS 1777, 2215-02

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31712positivecoccus-shapedno
69480no93.672
69480positive100

colony morphology

  • @ref: 7901
  • type of hemolysis: alpha
  • hemolysis ability: 1

pigmentation

  • @ref: 31712
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7901TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36502MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
117088CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7901positivegrowth37mesophilic
31712positivegrowth45thermophilic
31712positiveoptimum45thermophilic
36502positivegrowth37mesophilic
59248positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7901microaerophile
31712anaerobe
59248aerobe

spore formation

@refspore formationconfidence
31712yes
69481yes100
69480no99.834

observation

  • @ref: 31712
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3171217306maltose+carbon source
3171233942ribose+carbon source
3171217992sucrose+carbon source
3171227082trehalose+carbon source
317124853esculin+hydrolysis
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838127082trehalose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose+builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
7901catalase-1.11.1.6
7901cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
7901-+----+---+-+---+--+-----+--+++-
7901-+---+/-+--+/-++/-+---+--++++--+--+++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
7901human fecesOregonUSAUSANorth America
59248Human fecesOregonUSAUSANorth America2000-07-01
117088Human, FecesOregonUnited States of AmericaUSANorth America2000

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79011Risk group (German classification)
1170882Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7901
  • description: Enterococcus caccae strain 2215-02 16S ribosomal RNA gene, partial sequence
  • accession: AY943820
  • length: 1483
  • database: ena
  • NCBI tax ID: 317735

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus caccae DSM 19114GCA_001885825scaffoldncbi317735
66792Enterococcus caccae strain DSM 19114317735.3wgspatric317735

GC content

  • @ref: 7901
  • GC-content: 32.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.383no
gram-positiveyes94.349yes
anaerobicno95.815no
aerobicno94.451no
halophileyes79.808no
spore-formingno82.713yes
glucose-utilyes87.067no
thermophileno99.421no
motileno94.886yes
glucose-fermentyes80.301no

External links

@ref: 7901

culture collection no.: DSM 19114, ATCC BAA 1240, CCUG 51564, CCM 7399, CIP 109321

straininfo link

  • @ref: 74840
  • straininfo: 297158

literature

  • topic: Phylogeny
  • Pubmed-ID: 16825620
  • title: Enterococcus caccae sp. nov., isolated from human stools.
  • authors: Carvalho MDGS, Shewmaker PL, Steigerwalt AG, Morey RE, Sampson AJ, Joyce K, Barrett TJ, Teixeira LM, Facklam RR
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64103-0
  • year: 2006
  • mesh: Bacterial Proteins/analysis/isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Enterococcus/*classification/genetics/isolation & purification/physiology, Feces/*microbiology, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Serotyping, United States
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7901Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19114)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19114
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31712Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2798828776041
36502Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7050
59248Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51564)https://www.ccug.se/strain?id=51564
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74840Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297158.1StrainInfo: A central database for resolving microbial strain identifiers
117088Curators of the CIPCollection of Institut Pasteur (CIP 109321)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109321