Strain identifier

BacDive ID: 5324

Type strain: Yes

Species: Enterococcus dispar

Strain Designation: E18-1

Culture col. no.: DSM 6630, ATCC 51266, NCFB 2821, NCIMB 13000, CCUG 33309, CIP 103646

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General

@ref: 2636

BacDive-ID: 5324

DSM-Number: 6630

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic

description: Enterococcus dispar E18-1 is a microaerophile, mesophilic bacterium that was isolated from human clinical source.

strain history: <- NCIMB <- M.D. Collins <- R.R. Facklam, E18-1

doi: 10.13145/bacdive5324.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus dispar
  • full scientific name: Enterococcus dispar Collins et al. 1991

@ref: 2636

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus dispar

full scientific name: Enterococcus dispar Collins et al. 1991

strain designation: E18-1

type strain: yes

Morphology

colony morphology

  • @ref: 2636
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2636COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), microaerophilicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
2636TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), microaerophilicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
34408MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
2636positivegrowth37mesophilic
34408positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2636microaerophile
51449microaerophile

murein

  • @ref: 2636
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
2636++--+-+--++-----+-+------+--++--
2636+++-+++--++-----+-++++---++/--+++/--

Isolation, sampling and environmental information

isolation

@refsample type
2636human clinical source
51449Synovial fluid

isolation source categories

Cat1Cat2Cat3
#Infection#Medical environment#Clinic
#Host#Human

Safety information

risk assessment

  • @ref: 2636
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterococcus dispar 16S rRNA geneY183581397ena1139219
2636Enterococcus dispar 16S ribosomal RNA gene, partial sequenceAF0610071514ena1139219

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus dispar ATCC 51266GCA_000406945scaffoldncbi1139219
66792Enterococcus dispar ATCC 51266GCA_000407585contigncbi1139219
66792Enterococcus dispar DSM 6630GCA_001886105contigncbi44009
66792Enterococcus dispar ATCC 51266 [PRJNA206267]1139219.3wgspatric1139219
66792Enterococcus dispar ATCC 51266 [PRJNA206362]1139219.4wgspatric1139219
66792Enterococcus dispar strain DSM 663044009.3wgspatric44009

GC content

  • @ref: 2636
  • GC-content: 39.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2636

culture collection no.: DSM 6630, ATCC 51266, NCFB 2821, NCIMB 13000, CCUG 33309, CIP 103646

straininfo link

@refpassport
20218http://www.straininfo.net/strains/39993
20218http://www.straininfo.net/strains/115399
20218http://www.straininfo.net/strains/39995
20218http://www.straininfo.net/strains/39996

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2636Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6630)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6630
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34408Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15466
51449Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33309)https://www.ccug.se/strain?id=33309
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)